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Sample GSM15089 Query DataSets for GSM15089
Status Public on Jan 15, 2004
Title Day 3 Mouse #33 - 3rd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 3 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE955 Day 3 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 40162.7 26565.8 25809 3857.53 1023.62 1018 31.1341 1986.83 2214.54 2190.5 237.715 779.654 777 44.6585 -1.30566 0
2 50.3063 993.72 1004 35.2663 1027.14 1026.5 28.9803 60.9913 750.28 750 43.0073 787.243 787.5 49.1337 0 0
3 49.452 979.36 983 25.0048 1021.27 1022 29.7595 64.7573 751.4 762 51.2307 771.342 768 40.271 0.117105 0
4 72.2892 1003.46 1017 40.7296 1022.24 1021 28.2782 70.9106 762.038 772 67.7841 778.724 779 39.3871 -0.00836219 0
5 48.7996 978.56 977 34.8091 1019.3 1020 29.1986 52.9813 739.8 731 40.6991 769.121 768 42.8159 0 0
6 83.9379 1020.65 1024.5 27.4925 1031.63 1032 28.3667 85.0856 772.423 770.5 42.4558 778.785 777 50.3776 0.00589808 0
7 49.5148 984.955 984.5 18.9196 1024.06 1024 29.864 67.5112 753.636 756 36.9279 776.847 774 54.1242 0 0
8 19516.4 13374.4 13354 1047.3 1032.72 1035 28.3719 43432.3 33754.2 33773.5 2821.32 786.649 783.5 47.6593 0.347412 1.154077683
9 316.314 1170.84 1166 43.8926 1032.8 1033 26.6004 227.688 871.72 880 47.931 770.993 774 44.9861 -0.142778 -0.47429825
10 200.385 1098.96 1102 44.0402 1034.1 1034 26.5912 219.667 855.68 855 66.2852 761.98 763 47.5848 0.0398999 0.132544599
11 62.7898 1016.88 1019 24.6481 1041.93 1045 31.2868 62.6581 757.64 751 50.438 780.283 777.5 49.1779 -0.000911978 0
12 74705.6 48063.3 48039 9665.75 1040.61 1039 31.8375 77752.2 60360.6 63807 6638.57 784.07 776 51.5686 0.0173595 0.057667011
13 194.418 1101.83 1101 17.077 1040.57 1040 29.6422 158.098 830.917 823 58.0801 783.875 780 47.0119 -0.0898097 0
14 216.226 1122.11 1129.5 42.7589 1046.84 1044 27.9552 149.969 831.25 831.5 59.9695 790.318 791.5 41.0762 -0.158905 -0.527870984
15 8706.48 6535.61 6338.5 806.891 1042.36 1042 27.5544 39043.5 30288 28918.5 4136.69 780.541 777 47.2855 0.651707 2.164923793
16 407.781 1240.65 1236.5 80.2491 1045.34 1046.5 21.0341 395.182 1005.77 1006 82.1493 776.801 778.5 44.9006 -0.01363 -0.04527788
17 1725.5 2069.31 2049 121.318 1042.25 1045 27.6469 1237.32 1644.88 1636 115.711 770.34 766 44.8584 -0.144434 -0.479799362
18 126.609 1065.04 1067 30.3174 1047.92 1044.5 31.1815 103.628 789.643 784 47.106 783.025 782 46.4667 -0.0869876 0
19 119.502 1063.08 1066 31.4628 1050.85 1051 28.4031 90.1815 785.417 772.5 51.0549 788.685 782 49.505 -0.122257 0
20 224.464 1124.56 1134 41.1651 1044.33 1042 27.9687 207.63 861.037 863 59.7736 776.333 774 44.2957 -0.0338568 -0.112469855

Total number of rows: 16281

Table truncated, full table size 1959 Kbytes.




Supplementary data files not provided
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