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Sample GSM15090 Query DataSets for GSM15090
Status Public on Jan 15, 2004
Title Day 7 Mouse #54 - 3rd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 7 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE956 Day 7 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 73156.5 46277.7 45209 8712.08 978.632 978.5 34.5326 2858.86 2437.42 2448 381.121 630.456 627.5 41.372 -1.40806 0
2 87.0173 973.259 977 35.6496 972.588 969.5 27.8682 126.948 662.037 655 35.2894 633.635 632.5 39.1493 0.164022 0
3 55.5017 938.077 936 25.4934 983.095 983 32.0864 69.6591 639.462 635.5 49.4936 644.565 645 42.14 0.0986711 0
4 135.178 1016.4 1013 25.8683 985.092 982 28.6304 117.155 676.56 675 34.8737 655.026 649 40.8763 -0.0621449 0
5 48.5744 957.2 950 29.904 991.132 989 28.9493 74.6329 658.96 643 60.4431 662.153 662.5 46.2175 0.186523 0
6 134.818 1037.7 1033 32.3975 1006.61 1005 25.3618 118.99 699.704 693 51.0767 677.007 680 34.9438 -0.0542399 0
7 46.9325 966.111 964 28.6146 1011.36 1009 27.0522 65.7958 673.926 670 26.2091 681.589 682 38.3481 0.146724 0
8 28949 18832 18567 1472.01 1016.14 1015 32.6369 61172.1 40627.3 39304 3165.03 695.322 689 55.539 0.32492 1.079360877
9 478.387 1257.41 1254 54.6839 1021.89 1023 25.6667 416.526 936.778 941 85.9116 712.417 701 47.182 -0.0601364 -0.199768797
10 449.858 1240.28 1236 37.4628 1022.01 1022 24.8457 443.152 943.04 964 66.7392 700.902 699 42.7297 -0.00652233 -0.021666711
11 162.617 1056.54 1063.5 26.7196 1007.63 1009 25.3106 149.127 719.385 716 42.0267 677.653 676.5 43.4507 -0.0376094 0
12 96359.5 60048.9 61439 5600.93 1007.58 1007 30.4214 98522.2 65445.5 65516 166.828 679.5 672 53.5917 0.00963937 0
13 278.961 1126.09 1128 28.0193 1007.8 1007 29.0083 277.712 796.739 791 36.9326 668.61 666 44.9223 -0.00194862 -0.006473176
14 383.018 1193.19 1180 42.8513 1014.49 1011.5 24.0712 405.95 894.37 882 54.526 678.027 678.5 31.3921 0.0252535 0.083890311
15 11974.1 8370.46 7897 1138.09 1011.53 1009 31.6235 60141.4 39831.1 37163 5877.75 685.385 684 38.7206 0.70093 2.32843906
16 689.502 1371.27 1371 105.136 1010.46 1010 30.0869 765.924 1139.12 1109 106.335 678.649 676 37.679 0.0456499 0.151645685
17 1018.56 1569.63 1555 79.7227 1011.49 1005.5 32.1517 857.289 1201.11 1189 89.4029 678.9 675.5 49.4363 -0.0748595 -0.248677876
18 254.823 1135.18 1152 75.4787 1032.02 1024 48.8832 321.265 857.143 855.5 122.339 700.155 696 66.7463 0.100625 0.334269015
19 173.572 1053.85 1056 28.6016 998.045 1002 26.0916 142.031 702.556 696 41.8333 665.361 663 37.1749 -0.0870956 0
20 447.716 1215.43 1219 32.4931 999.007 998 25.8426 546.656 968.87 966 54.7003 656.884 651 42.633 0.0867113 0.288048704

Total number of rows: 16281

Table truncated, full table size 1946 Kbytes.




Supplementary data files not provided
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