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GEO accession:
Sample GSM154015
Query DataSets for GSM154015
Status
Public on Mar 01, 2007
Title
E. histolytica strain Ap replicate 1
Sample type
RNA
Source name
Mouse-adapted trophozoites
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS mouse adapted
Media: TYI
Mouse adapted
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
SPIA
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites after long term axenic growth. Isolated mid-log phase
Data processing
GCOS scaling only- target 500
Submission date
Jan 04, 2007
Last update date
Mar 06, 2015
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (2)
GSE6648
Gene expression in Entamoeba histolytica cysts and trophozoites
GSE8484
Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome.
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1.m00596_at
3320.7
P
0.000219
1.m00597_at
363.3
P
0.000266
1.m00599_at
5.6
A
0.378106
1.m00600_x_at
21.6
P
0.002228
1.m00602_at
52.9
P
0.000673
1.m00602_x_at
38.4
P
0.000673
1.m00603_at
45.4
P
0.003067
1.m00603_x_at
54.8
P
0.000562
1.m00606_s_at
278.3
P
0.000219
1.m00607_at
163.9
P
0.000266
1.m00607_x_at
144.2
P
0.000322
1.m00608_at
208.2
P
0.000219
1.m00608_x_at
184.3
P
0.000219
1.m00609_at
88.1
P
0.000388
1.m00609_x_at
93.1
P
0.000959
1.m00610_at
56.8
P
0.000219
1.m00611_at
38.3
P
0.011447
1.m00611_x_at
66.1
P
0.000959
1.m00613_at
1114.6
P
0.000219
1.m00613_x_at
1171.2
P
0.000219
Total number of rows:
11478
Table truncated, full table size
345 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM154015.cel.gz
1.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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