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Sample GSM155196 Query DataSets for GSM155196
Status Public on Aug 28, 2007
Title MCF7 High dose treatment group
Sample type RNA
 
Source name Ductal Breast Carcinoma Cell Line
Organism Homo sapiens
Characteristics See publication for details
Treatment protocol High dose treatment group. 5-aza-2-deoxycytidine qod for 6 days.
Growth protocol See publication for details.
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol please see the Southwestern Medical Center Microarray Core Facility website for details
 
Hybridization protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Scan protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Description High dose treatment group
Data processing please see the Southwestern Medical Center Microarray Core Facility website for details
 
Submission date Jan 12, 2007
Last update date Aug 28, 2018
Contact name David S Shames
E-mail(s) [email protected]
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL570
Series (1)
GSE5816 A Genome-wide Screen for Hypermethylated Genes in Lung Cancer
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Call
DETECTION P-VALUE P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 147.045 P 5.16732e-05
AFFX-BioB-M_at 207.298 P 4.42873e-05
AFFX-BioB-3_at 115.24 P 4.42873e-05
AFFX-BioC-5_at 327.375 P 4.42873e-05
AFFX-BioC-3_at 438.998 P 4.42873e-05
AFFX-BioDn-5_at 767.845 P 4.42873e-05
AFFX-BioDn-3_at 1924.22 P 4.42873e-05
AFFX-CreX-5_at 4823.47 P 4.42873e-05
AFFX-CreX-3_at 6077.87 P 4.42873e-05
AFFX-DapX-5_at 1.74292 A 0.470238
AFFX-DapX-M_at 5.1716 A 0.382599
AFFX-DapX-3_at 1.27979 A 0.686277
AFFX-LysX-5_at 1.14933 A 0.876428
AFFX-LysX-M_at 0.971008 A 0.966323
AFFX-LysX-3_at 0.561521 A 0.645559
AFFX-PheX-5_at 3.09859 A 0.51489
AFFX-PheX-M_at 0.207464 A 0.937071
AFFX-PheX-3_at 7.35505 A 0.39692
AFFX-ThrX-5_at 0.472454 A 0.966335
AFFX-ThrX-M_at 1.22923 A 0.699425

Total number of rows: 54675

Table truncated, full table size 1638 Kbytes.




Supplementary file Size Download File type/resource
GSM155196.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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