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Sample GSM16107 Query DataSets for GSM16107
Status Public on May 10, 2004
Title GC2_SARB36_LT2_2D621_3
Sample type genomic
 
Channel 1
Source name SARB36 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Newport
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Newport
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB36/LT2
User - PCheng
Date_of_Scan = Fri Feb 07 12:16:14 2003
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2430 41440 5981.774414 36.35294 4713.144531 118.666191 179.834061 18600 47.340633 0.944008 0.872589 0.995621 50.408413 0.854847 6864.285645 32.588234 5827.100098 83.999687 175.17157 18900 47.340633 0.942838 0.850418 0.997078 81.717991 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 5945.421474 6831.697411 0.026010844 0.031838248 0.816968435 -0.087794723
2 2690 41450 1457.4375 53.191177 1347.157227 141.774704 183.860046 17600 49.238914 0.95677 0.967438 0.995712 10.279954 0.847527 1604.136353 60.323528 1348.135986 143.827789 177.518127 15400 49.238914 0.913673 0.963539 0.995621 11.153174 0.859058 1 1 1 1 1 1 1 1 1 1 1 1 1 1404.246323 1543.812825 0.006143489 0.007194741 0.85388602 -0.068600097
3 2930 41450 10964.71973 77 9142.305664 220.369431 177.159134 19300 40.784275 0.933866 0.807686 0.99427 49.756083 0.859711 8327.060547 45.573528 7315.334473 141.024109 181.77066 19900 40.784275 0.956026 0.835724 0.994759 59.047071 0.851326 1 1 1 1 1 1 1 1 1 1 1 1 1 10887.71973 8281.487019 0.047633087 0.038594807 1.234183851 0.09137986
4 3180 41450 4096.420898 55.676472 2793.227295 143.772247 168.124725 16400 40.784275 0.884038 0.932404 0.996101 28.492431 0.876137 3232.497314 35.970589 2713.761475 115.917488 186.097076 18700 40.784275 0.965462 0.936142 0.99601 27.886192 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 4040.744426 3196.526725 0.017678002 0.014897002 1.186681837 0.074334295
5 3430 41460 7105.67041 35.205883 5350.822754 132.718704 173.34491 17600 35.854969 0.957523 0.884125 0.996262 53.539329 0.866646 6020.971191 53.485294 4583.733398 118.789352 175.534622 17400 35.854969 0.923614 0.887932 0.996803 50.686118 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 7070.464527 5967.485897 0.030932836 0.027810702 1.11226379 0.046207799
6 3680 41460 5663.491211 26.882353 4038.728516 87.039108 179.479706 16900 35.854969 0.937331 0.901421 0.997581 65.068351 0.855491 4503.721191 27.514706 3616.619873 111.369827 186.438858 18300 35.854969 0.953818 0.920433 0.996223 40.43933 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 5636.608858 4476.206485 0.024659808 0.020860785 1.182113124 0.072659039
7 3930 41470 8581.738281 28.014706 5784.662109 76.761208 170.381531 16800 33.283638 0.941563 0.865166 0.997787 111.797854 0.872034 6818.994141 65.794121 5091.749023 182.488571 183.339935 17700 33.283638 0.942647 0.887413 0.99324 37.366691 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 8553.723575 6753.20002 0.037422001 0.031472421 1.189041056 0.075196851
8 4180 41470 7736.900879 66.558823 6153.121582 238.486862 178.768906 18200 33.283638 0.942197 0.868187 0.992714 32.441623 0.856784 6340.264648 49.838234 5324.675293 140.6978 184.033096 18900 33.283638 0.957732 0.877174 0.996292 45.062998 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 7670.342056 6290.426414 0.033557263 0.029315724 1.144684752 0.058685898
9 4430 41480 6470.916992 25.088236 5327.758789 72.35479 186.097076 19300 33.615803 0.953995 0.882805 0.99765 89.433153 0.84346 5934.680176 27.029411 4979.989258 75.13887 184.895889 19700 33.615803 0.942257 0.895096 0.997337 78.982824 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 6445.828756 5907.650765 0.028200094 0.027531848 1.024271767 0.010415202
10 4690 41480 5958.481445 48.926472 5409.272461 144.194244 180.364288 18900 43.48719 0.942198 0.874443 0.99617 41.322603 0.853883 5898.163086 57.308823 4931.8125 184.167694 178.946869 17800 43.48719 0.959308 0.884247 0.99279 32.026046 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 5909.554973 5840.854263 0.02585393 0.027220551 0.949794519 -0.022370341
11 4940 41480 8030.205078 51.25 6866.938477 148.785065 171.127197 19500 43.48719 0.917379 0.857979 0.995415 53.971849 0.870678 7789.963867 36.220589 6524.939453 100.100075 178.768906 19300 43.48719 0.938409 0.859779 0.997238 77.821759 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 7978.955078 7753.743278 0.034907425 0.036135325 0.966019414 -0.015014145
12 5190 41480 5871.475586 29.705883 3877.776123 105.508728 171.127197 18500 43.48719 0.958726 0.910461 0.995804 55.649193 0.870678 5142.141602 32.64706 3818.471436 130.236847 179.834061 19800 43.48719 0.932452 0.912613 0.996277 39.483001 0.854847 1 1 1 1 1 1 1 1 1 1 1 1 1 5841.769703 5109.494542 0.025557374 0.023812143 1.073291635 0.030717745
13 5440 41490 10272.70117 42.5 8517.791016 134.394104 180.716904 19400 45.971264 0.946314 0.810822 0.996086 76.437142 0.853242 8754.333008 53.39706 7389.046875 128.000717 177.518127 19500 45.971264 0.950853 0.839127 0.996132 68.392843 0.859058 1 1 1 1 1 1 1 1 1 1 1 1 1 10230.20117 8700.935948 0.044756485 0.040549595 1.103746793 0.042869455
14 5690 41500 5443.214355 40.235294 4383.024902 106.930176 170.754776 16800 50.35453 0.939261 0.895287 0.996956 50.904381 0.871355 4933.438965 21.102942 4205.464844 64.922722 173.34491 18000 50.35453 0.921835 0.904922 0.998055 75.989404 0.866646 1 1 1 1 1 1 1 1 1 1 1 1 1 5402.979061 4912.336023 0.023637693 0.022893311 1.032515239 0.01389647
15 5940 41500 14271.56641 37.455883 11092.44629 103.01622 182.64415 21000 50.35453 0.956088 0.775246 0.996498 138.537081 0.849738 12209.1875 30.720589 9884.131836 93.239517 181.945694 21900 50.35453 0.959368 0.799751 0.99749 130.944345 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 14234.11052 12178.46691 0.062273336 0.056756181 1.097208 0.040288965
16 6190 41500 8910.413086 27.338236 6935.000977 91.453377 184.378693 18900 50.35453 0.952693 0.854195 0.996918 97.431209 0.846584 7657.179688 47.808823 5811.755371 116.413734 175.534622 18900 50.35453 0.92884 0.8703 0.996758 65.77557 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 8883.07485 7609.370865 0.038862892 0.035462496 1.09588712 0.039765823
17 6440 41510 3537.032227 35.117645 3128.668945 131.210617 186.268051 18600 56.194309 0.949425 0.925087 0.996597 26.956906 0.843149 3226.198975 38.073528 2829.901367 122.820503 181.068848 18100 56.194309 0.957239 0.926514 0.996109 26.267593 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 3501.914582 3188.125447 0.015320655 0.014857849 1.031148939 0.013321399
18 6690 41500 8261.800781 41.5 5839.697754 114.70813 180.010986 18600 50.35453 0.919015 0.865776 0.996704 72.024544 0.854526 7240.541504 16.014706 5371.630371 72.723457 188.307541 19200 50.35453 0.96376 0.878555 0.997688 99.562669 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 8220.300781 7224.526798 0.035963298 0.033668979 1.068143383 0.028629555
19 2430 41680 2726.271484 29.720589 2380.438477 104.212303 177.697342 16200 54.944645 0.937836 0.948906 0.995903 26.160745 0.858732 2101.257324 65.691177 1916.618774 168.562164 178.946869 17100 54.944645 0.941674 0.955292 0.995491 12.465771 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 2696.550895 2035.566147 0.01179724 0.009486495 1.24358265 0.094674654
20 2690 41690 3829.526611 12.338235 3853.534668 57.607422 174.260635 16900 54.792782 0.934682 0.908943 0.998665 66.476271 0.864981 3348.508545 60.367645 3527.073486 169.220322 184.895889 17500 54.792782 0.952875 0.91497 0.99556 19.787863 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 3817.188376 3288.1409 0.016699958 0.015323958 1.089794033 0.037344426

Total number of rows: 5184

Table truncated, full table size 1744 Kbytes.




Supplementary data files not provided
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