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Sample GSM16261 Query DataSets for GSM16261
Status Public on May 10, 2004
Title GC2_SARB34_LT2_2D632_2
Sample type genomic
 
Channel 1
Source name SARB34 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB34/LT2
User - PCheng
Date_of_Scan = Thu Feb 13 17:43:13 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2450 22350 5160.544922 38.779411 4406.249023 118.046898 181.244553 17800 42.774822 0.931746 0.880722 0.997093 43.716057 0.852283 3379.161377 19.544117 2454.933594 81.650406 166.029037 15500 42.774822 0.90901 0.934937 0.997643 41.385727 0.879947 1 1 1 1 1 1 1 1 1 1 1 1 1 5121.765511 3359.61726 0.029671535 0.020723536 1.431779562 0.155876159
2 2700 22360 1767.082764 44.544117 1575.964233 118.410675 178.946869 15700 37.965958 0.918859 0.962311 0.995811 14.92334 0.85646 1610.055176 17.102942 1445.974731 72.957184 177.33873 14500 37.965958 0.922029 0.962418 0.99852 22.068494 0.859384 1 1 1 1 1 1 1 1 1 1 1 1 1 1722.538647 1592.952234 0.009979052 0.009826001 1.015576148 0.006712492
3 2950 22360 7745.040527 38.382355 6983.194336 100.830139 177.159134 19700 37.965958 0.954186 0.849091 0.997543 76.812753 0.859711 6247.314453 29.294117 4945.912598 94.757675 171.313095 17500 37.965958 0.911601 0.882103 0.99678 65.929377 0.87034 1 1 1 1 1 1 1 1 1 1 1 1 1 7706.658172 6218.020336 0.044646398 0.038355372 1.164019429 0.065960229
4 3200 22360 3201.7771 20.941177 2661.566162 69.611473 179.834061 18400 37.965958 0.926989 0.933731 0.997627 45.994963 0.854847 2789.337402 19.264706 2101.751953 73.675697 173.711777 16300 37.965958 0.917413 0.942047 0.997757 37.859667 0.865979 1 1 1 1 1 1 1 1 1 1 1 1 1 3180.835923 2770.072696 0.018427295 0.017086977 1.078440954 0.032796372
5 3450 22360 6110.161621 47.735294 5310.561035 130.371292 186.609512 19200 37.965958 0.973556 0.884705 0.996101 46.867386 0.842528 4860.55957 23.397058 3574.475586 101.070412 173.894928 16800 37.965958 0.931729 0.915726 0.997765 48.090826 0.865646 1 1 1 1 1 1 1 1 1 1 1 1 1 6062.426327 4837.162512 0.035120994 0.029837658 1.177069392 0.070802067
6 3700 22370 4742.083984 8.882353 3851.224121 29.426624 181.77066 16700 35.39975 0.959621 0.914543 0.998962 161.149439 0.851326 3630.216064 48.64706 2849.263428 131.639236 176.258484 16200 35.39975 0.910901 0.934967 0.995415 27.577006 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 4733.201631 3581.569004 0.027420498 0.022092628 1.241160523 0.093827954
7 3950 22370 6232.244141 25.67647 5046.78418 78.761955 185.754669 17600 35.39975 0.958516 0.888184 0.998055 79.127596 0.844082 4763.473145 19.882353 3755.378174 77.226654 171.869614 16900 35.39975 0.950623 0.913635 0.997849 61.681724 0.869328 1 1 1 1 1 1 1 1 1 1 1 1 1 6206.567671 4743.590792 0.035956038 0.029260469 1.228826444 0.089490549
8 4200 22370 5093.608398 39.294117 4737.310547 120.852699 182.295258 19400 35.39975 0.934308 0.884583 0.995811 42.147246 0.850372 4047.933838 23.558823 3338.738281 77.339989 172.424332 16600 35.39975 0.930433 0.918686 0.997818 52.339468 0.868319 1 1 1 1 1 1 1 1 1 1 1 1 1 5054.314281 4024.375015 0.029280775 0.024824042 1.179532931 0.07171007
9 4450 22370 5307.677734 43.073528 4361.53418 115.899765 179.656982 18000 35.39975 0.945571 0.902107 0.997513 45.795414 0.855169 3644.80127 21.852942 2739.227051 74.434235 172.608841 16600 35.39975 0.942285 0.935417 0.997452 48.966733 0.867984 1 1 1 1 1 1 1 1 1 1 1 1 1 5264.604206 3622.948328 0.030499032 0.022347873 1.364739801 0.135049857
10 4700 22380 4349.125 49.617645 3881.71582 107.634125 185.239883 17600 35.565022 0.945723 0.909332 0.997147 40.406563 0.845018 3767.738525 58.367645 2793.255127 142.548233 172.977264 15300 35.565022 0.913669 0.927719 0.995911 26.431324 0.867314 1 1 1 1 1 1 1 1 1 1 1 1 1 4299.507355 3709.37088 0.02490801 0.022880964 1.088590924 0.036864709
11 4950 22380 4733.894531 62.882355 4022.024902 175.584015 179.479706 18000 35.565022 0.936121 0.909309 0.995384 26.960851 0.855491 4513.69873 46.705883 3139.796875 172.403381 164.29451 15600 35.565022 0.932729 0.928169 0.996536 26.181034 0.883101 1 1 1 1 1 1 1 1 1 1 1 1 1 4671.012176 4466.992847 0.02706022 0.027554296 0.982069025 -0.007857987
12 5200 22380 3904.336914 18.602942 2851.609375 68.391136 174.62558 18400 35.565022 0.930812 0.928787 0.99749 57.088347 0.864317 3253.880615 16.191177 2260.49585 63.329098 176.619293 17600 35.565022 0.922091 0.942596 0.998077 51.380499 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 3885.733972 3237.689438 0.022510928 0.019971434 1.127156311 0.051984147
13 5450 22390 8108.366699 43.955883 7182.817383 135.675034 183.686844 19100 38.426544 0.951056 0.837219 0.997246 59.763145 0.847842 7259.458984 22.485294 5544.9375 70.890182 176.258484 17000 38.426544 0.927723 0.871094 0.99778 102.404293 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 8064.410816 7236.97369 0.046718939 0.044640706 1.046554672 0.019761921
14 5700 22390 4528.10791 58.117645 3878.508301 125.752838 186.779999 18500 38.426544 0.952734 0.909935 0.996658 36.007998 0.842218 4083.257568 27.338236 3174.772461 105.381699 168.691757 16300 38.426544 0.924147 0.928391 0.995682 38.747312 0.875106 1 1 1 1 1 1 1 1 1 1 1 1 1 4469.990265 4055.919332 0.025895655 0.025018621 1.035055267 0.01496354
15 5950 22390 10538.41309 51.14706 8666.885742 165.829819 179.656982 20600 38.426544 0.94508 0.808853 0.996803 63.549566 0.855169 9646.995117 12.279411 7124.306641 56.070011 169.820145 18900 38.426544 0.926058 0.851196 0.997772 172.05267 0.873054 1 1 1 1 1 1 1 1 1 1 1 1 1 10487.26603 9634.715706 0.060755082 0.05943099 1.022279499 0.009569651
16 6200 22400 6376.516602 46.205883 4811.824707 141.495483 175.17157 18200 43.454895 0.928212 0.895348 0.994789 45.06516 0.863324 6213.719238 17.235294 4572.202637 107.156761 172.239624 17800 43.454895 0.94464 0.897301 0.99881 57.987188 0.868655 1 1 1 1 1 1 1 1 1 1 1 1 1 6330.310719 6196.483944 0.036672909 0.038222526 0.959458003 -0.01797403
17 6450 22400 4552.756836 39.411766 3890.325928 108.694321 183.860046 17700 43.454895 0.939347 0.90419 0.99646 41.885876 0.847527 3157.550537 18.838236 2772.71167 79.532326 182.12056 17800 43.454895 0.947917 0.933205 0.997536 39.701474 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 4513.34507 3138.712301 0.02614682 0.019360901 1.350495995 0.130493301
18 6700 22400 5788.619629 30.970589 4108.145996 102.028084 175.896927 18400 43.454895 0.927468 0.905235 0.996193 56.735552 0.862006 5508.480957 42.544117 4174.800293 158.626511 181.068848 18300 43.454895 0.927298 0.900177 0.996399 34.726106 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 5757.64904 5465.93684 0.033355351 0.033716204 0.989297361 -0.004673149
19 2450 22600 2878.345459 34.985294 2660.918213 129.055298 179.479706 16500 42.774822 0.944833 0.934135 0.996925 22.303195 0.855491 2463.313965 22.941177 1947.115112 92.908539 167.1754 13700 42.774822 0.870153 0.94648 0.996628 26.513322 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 2843.360165 2440.372788 0.016472223 0.015053249 1.094263648 0.039121972
20 2690 22610 5028.10791 89.661766 5136.57373 231.58046 181.42009 17600 28.964516 0.956848 0.871017 0.99334 21.712142 0.851963 4157.546875 26.661764 3751.916016 94.101662 160.769302 15000 28.964516 0.886186 0.903252 0.996399 44.18144 0.88951 1 1 1 1 1 1 1 1 1 1 1 1 1 4938.446144 4130.885111 0.028609525 0.025481042 1.12277692 0.050293477

Total number of rows: 5184

Table truncated, full table size 1740 Kbytes.




Supplementary data files not provided
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