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Sample GSM16262 Query DataSets for GSM16262
Status Public on May 10, 2004
Title GC2_SARB34_LT2_2D632_3
Sample type genomic
 
Channel 1
Source name SARB34 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB34/LT2
User - PCheng
Date_of_Scan = Thu Feb 13 17:43:13 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2180 41090 5968.358398 32.632355 5046.873535 120.303337 172.239624 17300 43.23801 0.932722 0.854568 0.995888 49.610913 0.868655 3848.664551 13.147058 2640.665771 59.833168 167.1754 15500 43.23801 0.910081 0.923553 0.997513 64.323262 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 5935.726043 3835.517493 0.027700173 0.02054117 1.348519756 0.129857313
2 2420 41100 2357.177246 28.117647 1843.755615 97.616905 168.50296 14100 29.393347 0.942025 0.948227 0.996933 24.147224 0.875449 1628.963013 13.044118 1181.072998 68.201508 172.424332 13500 29.393347 0.93341 0.967438 0.997902 23.88456 0.868319 1 1 1 1 1 1 1 1 1 1 1 1 1 2329.059599 1615.918895 0.010868991 0.008654077 1.255938794 0.098968475
3 2680 41100 10260.91113 18.17647 8184.936523 64.930489 178.768906 18000 38.334389 0.938936 0.812874 0.998161 158.029169 0.856784 7724.208496 15.5 5193.340332 65.676842 174.077881 16300 38.334389 0.899195 0.875153 0.997284 117.609317 0.865313 1 1 1 1 1 1 1 1 1 1 1 1 1 10242.73466 7708.708496 0.047799633 0.041284101 1.157821826 0.063641732
4 2930 41100 4625.848145 47.323528 3423.705322 127.425415 180.187729 17100 38.334389 0.941065 0.921661 0.996475 36.302398 0.854204 3658.773438 19.411764 2354.015869 87.784546 153.890411 15000 38.334389 0.88156 0.943123 0.996986 41.679015 0.902017 1 1 1 1 1 1 1 1 1 1 1 1 1 4578.524617 3639.361674 0.02136654 0.019490654 1.096245362 0.039907769
5 3180 41110 7491.217773 54 6138.578613 166.323105 179.124664 17900 35.630402 0.94965 0.864265 0.994911 45.040151 0.856137 5430.962402 19.441177 3827.628174 67.624153 158.977386 15900 35.630402 0.9109 0.91124 0.997749 80.310986 0.892768 1 1 1 1 1 1 1 1 1 1 1 1 1 7437.217773 5411.521225 0.034707165 0.028981481 1.197563539 0.078298565
6 3430 41110 6588.658691 48.279411 5293.92041 102.6194 174.989761 17000 35.630402 0.924346 0.889687 0.997566 64.204806 0.863655 5088.892578 20.485294 3660.783447 75.532829 167.1754 15800 35.630402 0.896071 0.918594 0.9972 67.373255 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 6540.37928 5068.407284 0.0305219 0.027143929 1.124446664 0.05093886
7 3680 41110 7184.4375 64.044121 5745.471191 171.847076 177.159134 17600 35.630402 0.945833 0.873856 0.993797 41.807156 0.859711 5754.539063 19.17647 3834.144287 70.901642 155.536346 15400 35.630402 0.911053 0.91024 0.997322 81.162282 0.899025 1 1 1 1 1 1 1 1 1 1 1 1 1 7120.393379 5735.362593 0.033228645 0.030715818 1.081808877 0.034150541
8 3930 41110 6285.652344 35.911766 5247.836914 137.298538 178.768906 18700 35.630402 0.930349 0.882362 0.996086 45.780912 0.856784 4559.080078 9.161765 3140.570801 44.981461 182.12056 16200 35.630402 0.946728 0.926392 0.999352 101.354647 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 6249.740578 4549.918313 0.029165581 0.024367154 1.196921928 0.078065824
9 4180 41120 7079.078125 40.367645 5502.981445 108.637825 179.124664 17900 35.630402 0.956955 0.881866 0.996529 65.162186 0.856137 4969.449219 21.602942 3318.095459 69.669609 157.165054 15800 35.630402 0.889222 0.921921 0.997902 71.328794 0.896064 1 1 1 1 1 1 1 1 1 1 1 1 1 7038.71048 4947.846277 0.032847456 0.026498263 1.239607903 0.093284336
10 4430 41120 6170.911621 38.279411 4912.413574 96.827721 172.608841 17000 35.630402 0.938716 0.876762 0.997147 63.730836 0.867984 5092.693848 16.382353 3690.401123 68.738319 160.967178 16000 35.630402 0.899138 0.906624 0.99749 74.088134 0.889151 1 1 1 1 1 1 1 1 1 1 1 1 1 6132.63221 5076.311495 0.028619073 0.02718626 1.052703553 0.022306089
11 4680 41130 7551.931152 60.073528 6584.307617 137.417252 179.479706 18900 38.334389 0.949141 0.850121 0.995949 54.956209 0.855491 7149.029785 8.764706 5366.696777 57.072124 177.159134 16800 38.334389 0.899871 0.872597 0.999054 125.263075 0.859711 1 1 1 1 1 1 1 1 1 1 1 1 1 7491.857624 7140.265079 0.034962152 0.038239794 0.914287144 -0.038917387
12 4930 41130 4712.751465 29.794117 3126.406738 110.255272 176.43898 18100 38.334389 0.937235 0.924339 0.997238 42.744001 0.86102 3934.228516 10.588235 2279.161865 52.433678 170.754776 16200 38.334389 0.928902 0.941544 0.998512 75.032473 0.871355 1 1 1 1 1 1 1 1 1 1 1 1 1 4682.957348 3923.640281 0.021853894 0.021013113 1.04001224 0.017038451
13 5180 41130 10724.97754 38.808823 8662.507813 125.701645 182.12056 18200 38.334389 0.941849 0.804146 0.995148 85.320901 0.85069 7797.593262 15.352942 6001.340332 58.860008 166.984879 17700 38.334389 0.908041 0.853897 0.998016 132.476931 0.878209 1 1 1 1 1 1 1 1 1 1 1 1 1 10686.16872 7782.24032 0.049869001 0.041677901 1.196533387 0.077924821
14 5440 41140 5699.436523 12.676471 4727.164063 63.32325 187.290573 18100 51.721195 0.95441 0.896996 0.997208 90.005433 0.84129 4636.933105 21.691177 3647.37085 80.829704 167.555771 16500 51.721195 0.917221 0.908012 0.997635 57.366696 0.877171 1 1 1 1 1 1 1 1 1 1 1 1 1 5686.760052 4615.241928 0.026538327 0.024716995 1.073687421 0.030877865
15 5680 41130 11888.13184 38.720589 9031.370117 134.563507 177.518127 19700 38.334389 0.934089 0.794518 0.996941 88.345883 0.859058 9941.229492 16.07353 6962.752441 53.366745 169.256897 18300 38.334389 0.894804 0.832962 0.998161 186.281354 0.874078 1 1 1 1 1 1 1 1 1 1 1 1 1 11849.41125 9925.155962 0.055297489 0.053154317 1.040319802 0.017166865
16 5930 41140 7564.38916 40.014706 5737.853027 143.022125 169.256897 18500 43.23801 0.938705 0.873001 0.996521 52.889643 0.874078 6764.057617 6.602941 4727.728516 30.338459 168.124725 17300 43.23801 0.936897 0.894829 0.998924 222.953236 0.876137 1 1 1 1 1 1 1 1 1 1 1 1 1 7524.374454 6757.454676 0.035113898 0.036189647 0.970274665 -0.013105308
17 6180 41140 5476.206543 42.632355 4795.700195 94.959839 179.479706 18900 43.23801 0.948269 0.885246 0.997002 57.668659 0.855491 3570.274414 55.64706 2683.209473 159.09462 167.1754 16400 43.23801 0.925956 0.937057 0.996826 22.441201 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 5433.574188 3514.627354 0.025356788 0.018822638 1.347143156 0.129413749
18 6430 41140 6786.090332 42.35294 4985.929199 131.03569 187.630173 18800 43.23801 0.956698 0.879501 0.995888 51.788107 0.840672 6498.460449 10.735294 4582.70752 47.343021 175.17157 17600 43.23801 0.932788 0.898621 0.998802 137.263323 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 6743.737392 6487.725155 0.031470909 0.034745107 0.905765218 -0.04298436
19 2180 41340 3777.728271 35.573528 3647.879883 121.05658 180.364288 17300 43.23801 0.946611 0.911507 0.997581 31.206303 0.853883 3180.172363 3.897059 2696.916504 21.003298 155.945114 14500 43.23801 0.874962 0.935921 0.999489 151.413002 0.898282 1 1 1 1 1 1 1 1 1 1 1 1 1 3742.154743 3176.275304 0.017463463 0.017010589 1.026623112 0.011411037
20 2420 41350 5522.314941 14.073529 5431.200684 58.893101 169.444855 16500 29.393347 0.952408 0.876579 0.998543 93.768453 0.873737 4261.478516 47.64706 3652.541992 169.684326 148.415115 14000 29.393347 0.842635 0.900764 0.995346 25.114155 0.89509 1 1 1 1 1 1 1 1 1 1 1 1 1 5508.241412 4213.831456 0.025705236 0.022567236 1.139051179 0.056543238

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided
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