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Sample GSM16437 Query DataSets for GSM16437
Status Public on May 10, 2004
Title GC2_SARB32_LT2_2D722_1
Sample type genomic
 
Channel 1
Source name SARB32 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB32/LT2
User - PCheng
Date_of_Scan = Wed Apr 23 15:05:03 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2250 4000 19205.36523 63.14706 21271.11719 129.042542 189.990387 27100 28.841549 0.965954 0.500069 0.996162 148.829719 0.571507 4859.352539 56.573528 4837.534668 144.690125 182.818344 20700 28.841549 0.94687 0.859985 0.995323 33.584549 0.849421 1 1 1 0 1 1 1 1 1 1 1 1 1 19142.21817 4802.779011 226.7880229 108.1859468 2.096279873 0.321449265
2 2510 3990 712.421326 69.367645 572.854126 184.388779 181.945694 17800 27.504953 0.93548 0.981712 0.995407 3.863691 0.829459 790.619263 47.808823 656.965942 119.037468 185.583237 19700 27.504953 0.955305 0.981964 0.996567 6.641768 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 643.053681 742.81044 7.61859841 16.73232322 0.455322211 -0.341681164
3 2750 3980 6858.093262 60.117645 5507.453125 162.168198 182.12056 21500 13.733975 0.948251 0.86898 0.995491 42.290001 0.85069 8158.334961 33.029411 6191.475098 97.121864 182.818344 20600 13.733975 0.956708 0.86058 0.996651 84.001013 0.849421 1 1 1 1 1 1 1 1 1 1 1 1 1 6797.975617 8125.30555 80.53922675 183.0281744 0.440037317 -0.356510492
4 3000 3980 2354.27002 54.632355 1640.151855 152.225967 180.54068 20000 13.733975 0.941769 0.953552 0.995819 15.465627 0.853562 3062.06665 74.882355 2071.435791 163.757782 179.834061 19500 13.733975 0.930079 0.940567 0.99556 18.698755 0.854847 1 1 1 1 1 1 1 1 1 1 1 1 1 2299.637665 2987.184295 27.24502849 67.28840961 0.404899278 -0.392652997
5 3270 3990 4231.791992 38.25 2947.463135 106.99482 180.364288 23100 36.094547 0.966343 0.927597 0.996849 39.551373 0.853883 4604.304688 49 2973.097656 113.739555 185.583237 22000 36.094547 0.953992 0.923195 0.996429 40.481121 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 4193.541992 4555.304688 49.68311868 102.6114151 0.484187053 -0.314986828
6 3520 3980 3340.045166 51.632355 2386.380615 122.951256 186.779999 24300 32.881756 0.961737 0.939278 0.996376 27.165604 0.842218 3343.132568 40.264706 2199.328125 94.651382 185.067963 23400 32.881756 0.959371 0.94162 0.997375 35.320483 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 3288.412811 3302.867862 38.95957266 74.39940212 0.523654378 -0.280955261
7 3740 3980 2732.651855 76.485291 2124.842773 171.481384 184.895889 20400 6.506008 0.942634 0.944534 0.99511 15.93556 0.845644 3396.184082 40.808823 2715.527344 109.07238 182.469788 21200 6.506008 0.941777 0.929802 0.996796 31.136976 0.850055 1 1 1 1 1 1 1 1 1 1 1 1 1 2656.166564 3355.375259 31.46901566 75.58216786 0.416355029 -0.380536186
8 4010 3970 3533.025146 81.411766 2695.126465 163.240341 183.686844 19800 22.656336 0.951881 0.933746 0.994858 21.643088 0.847842 3822.431396 51.176472 2967.912842 109.460815 179.302277 19700 22.656336 0.945477 0.927711 0.997047 34.920546 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 3451.61338 3771.254924 40.89309646 84.95014736 0.481377581 -0.31751414
9 4250 3980 3503.298096 27.558823 3196.175049 84.08886 183.166229 19800 13.733975 0.951195 0.914764 0.997475 41.661858 0.848789 3556.435791 63.205883 3147.414795 170.987518 180.716904 19500 13.733975 0.959503 0.920227 0.993889 20.799388 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 3475.739273 3493.229908 41.17892873 78.68743997 0.523322766 -0.281230372
10 4500 3970 2073.36499 20.161764 2082.088867 60.490437 179.656982 18900 12.923453 0.94267 0.943924 0.998123 34.275914 0.855169 1721.838379 109.411766 1666.932861 239.85495 184.723648 19800 12.923453 0.950188 0.955154 0.993332 7.178665 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 2053.203226 1612.426613 24.32538883 36.32103402 0.669732828 -0.174098413
11 4740 3970 2571.276611 45.676472 2463.627441 140.765228 185.411636 20600 4.552109 0.951256 0.935944 0.99633 18.266419 0.844706 1967.453613 52.191177 1818.327637 130.374115 184.895889 19400 4.552109 0.945911 0.948425 0.996429 15.09083 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 2525.600139 1915.262436 29.9221259 43.14262214 0.693562987 -0.158914091
12 4990 3990 1299.855225 57.85294 948.014343 165.780228 183.686844 22100 16.246063 0.939452 0.972641 0.995728 7.840834 0.847842 2020.982422 61.720589 1640.045654 178.761398 185.067963 22700 16.246063 0.964308 0.949501 0.995636 11.305474 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 1242.002285 1959.261833 14.71466055 44.13373924 0.333410692 -0.477020477
13 5260 3970 5611.670898 61.485294 3991.845215 118.011826 186.438858 23100 22.656336 0.969389 0.906693 0.996552 47.551768 0.842838 5311.453613 64.691177 3950.974365 151.838211 191.824478 23800 22.656336 0.966387 0.910042 0.995872 34.981008 0.833046 1 1 1 1 1 1 1 1 1 1 1 1 1 5550.185604 5246.762436 65.75599591 118.1869831 0.556372573 -0.254634287
14 5500 3970 2192.925293 97.632355 1624.823486 262.295319 184.551254 20100 12.923453 0.936538 0.957687 0.991844 8.36052 0.84627 1740.96582 48.14706 1324.346924 147.428635 188.307541 20500 12.923453 0.958629 0.965767 0.996574 11.808872 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 2095.292938 1692.81876 24.824048 38.1319232 0.651004353 -0.186416107
15 5740 3980 5996.544922 77.308823 3644.802246 184.897003 188.645309 23500 6.506008 0.960555 0.902786 0.994881 32.431812 0.838827 6804.659668 86.058823 4336.922852 195.36853 191.326019 23800 6.506008 0.974767 0.882614 0.993919 34.829866 0.833953 1 1 1 1 1 1 1 1 1 1 1 1 1 5919.236099 6718.600845 70.12833308 151.3411698 0.463379087 -0.334063571
16 6000 3960 4282.861816 43.808823 3306.697754 121.004288 180.364288 21700 18.585188 0.945089 0.91803 0.995911 35.394298 0.853883 3919.953125 80.838234 3182.202148 200.108002 186.268051 23500 18.585188 0.954071 0.92627 0.994423 19.589187 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 4239.052993 3839.114891 50.22231167 86.47874045 0.580747493 -0.236012657
17 6250 3960 2692.932373 86.382355 2422.78418 137.51918 182.64415 20700 18.585188 0.961396 0.943886 0.996666 19.582231 0.849738 2028.783203 93.955879 1769.344482 169.935501 178.055252 20300 18.585188 0.955287 0.956673 0.995071 11.938548 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 2606.550018 1934.827324 30.8811821 43.58333489 0.708554822 -0.149626542
18 6500 3960 3125.111572 95.132355 2121.670898 223.641434 186.779999 24200 18.585188 0.967865 0.94548 0.991539 13.973759 0.842218 2889.767822 83.647057 2127.855469 183.972717 185.754669 25400 18.585188 0.969082 0.940659 0.994675 15.707589 0.844082 1 1 1 1 1 1 1 1 1 1 1 1 1 3029.979217 2806.120765 35.89777265 63.20982731 0.567914424 -0.245717101
19 2250 4230 2234.5 20.32353 2016.0448 62.225262 181.068848 20000 13.733975 0.940313 0.953247 0.998085 35.909853 0.852602 2691.038574 48.970589 2472.513916 127.920097 168.691757 18200 13.733975 0.905743 0.940407 0.996323 21.036871 0.875106 1 1 1 1 1 1 1 1 1 1 1 1 1 2214.17647 2642.067985 26.23252433 59.51442403 0.440775909 -0.355782151
20 2520 4230 2760.50708 58.60294 2203.958496 181.218613 188.138428 20900 32.881756 0.963041 0.944946 0.993683 15.233022 0.839748 3304.142822 43.955883 2323.851074 128.962036 184.205978 19600 32.881756 0.947503 0.942642 0.997124 25.62105 0.846898 1 1 1 1 1 1 1 1 1 1 1 1 1 2701.90414 3260.186939 32.01089301 73.43798456 0.435890135 -0.36062296

Total number of rows: 5184

Table truncated, full table size 1750 Kbytes.




Supplementary data files not provided
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