|
| Status |
Public on Jun 09, 2015 |
| Title |
MDAMB231_AVG_Beta |
| Sample type |
genomic |
| |
|
| Source name |
breast cancer cell lines
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MDAMB231
cell type: Basal-like cells
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from breast cancer cell lines and the fusion cell lines with a standard method using proteinase K digestion, phenol-chloroform extraction and ethanol precipitation.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
HumanMethylation450_16
|
| Data processing |
BeadStudio software
|
| |
|
| Submission date |
Apr 07, 2015 |
| Last update date |
Jun 09, 2015 |
| Contact name |
Kornelia Polyak |
| E-mail(s) |
[email protected]
|
| Phone |
617-632-2106
|
| Organization name |
Dana-Farber Cancer Institute
|
| Department |
Medical Oncology
|
| Lab |
Polyak
|
| Street address |
450 Brookline Ave
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE38548 |
Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer |
| GSE67619 |
Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [methylation450] |
|
