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Sample GSM16594 Query DataSets for GSM16594
Status Public on May 10, 2004
Title GC2_994730_LT2_2D730_1
Sample type genomic
 
Channel 1
Source name 994730 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Newport
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Newport
Extracted molecule genomic DNA
 
 
Description genomic comparison 994730/LT2
User - PCheng
Date_of_Scan = Thu May 01 15:26:37 2003
 
Submission date Feb 06, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2170 3720 8576.511719 119.808823 12417.20508 228.986877 189.990387 24800 21.772963 0.959901 0.610252 0.993439 37.454163 0.697431 2664.831787 85.132355 2717.604492 210.356979 179.834061 20800 21.772963 0.952229 0.915245 0.994049 12.668141 0.854847 1 1 1 0 1 1 1 1 1 1 1 1 1 8456.702896 2579.699432 143.3152864 56.71390266 2.526986853 0.402602983
2 2450 3710 696.044189 119.529411 745.611328 243.173813 184.378693 18100 47.648304 0.949407 0.978119 0.992897 2.862332 0.763289 534.602844 53.411766 526.552063 130.586304 184.723648 14100 47.648304 0.946142 0.985397 0.996666 4.093866 0.835901 1 1 1 1 1 0 1 1 1 1 1 1 1 576.514778 481.191078 9.77016475 10.57883861 0.923557406 -0.034536105
3 2690 3710 5698.031738 78.970589 4864.016113 166.521927 185.925949 22100 37.67128 0.97058 0.888771 0.995766 34.217907 0.843771 3429.414063 57.64706 2460.142822 132.020432 183.860046 19800 37.67128 0.953862 0.935715 0.99678 25.976389 0.847527 1 1 1 1 1 1 1 1 1 1 1 1 1 5619.061149 3371.767003 95.22592527 74.12726585 1.284627514 0.10877722
4 2930 3710 1837.928955 103.602943 1483.015137 217.830704 188.982483 21100 27.710829 0.964159 0.960602 0.993088 8.437419 0.838214 1499.481079 41.10294 1126.14563 136.038757 181.068848 18500 27.710829 0.938132 0.971115 0.996971 11.022455 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 1734.326012 1458.378139 29.39152909 32.06199714 0.916709242 -0.03776839
5 3180 3710 3102.149414 84.514709 2755.194824 162.698288 189.990387 24100 27.710829 0.972495 0.936554 0.996391 19.066884 0.836381 2047.040405 86.044121 1575.018311 212.914276 181.42009 19800 27.710829 0.94133 0.955635 0.993301 9.614388 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 3017.634705 1960.996284 51.13969208 43.11190327 1.186208175 0.074160913
6 3440 3710 2708.445557 98.176468 2115.573486 178.102509 187.290573 22000 37.67128 0.957574 0.947098 0.994621 15.207229 0.84129 2020.869141 77.852943 1348.055664 170.52774 185.239883 19100 37.67128 0.950638 0.962357 0.994278 11.850677 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 2610.269089 1943.016198 44.23608902 42.71661658 1.035570992 0.015179877
7 3680 3710 2280.682861 120.529411 2061.265381 208.784439 181.945694 20500 27.710829 0.958562 0.943855 0.994766 10.923625 0.851008 1738.392456 129.058823 1424.45459 358.294586 177.876389 18600 27.710829 0.958679 0.965111 0.988777 4.851852 0.854054 1 1 1 1 1 1 1 1 1 1 1 1 1 2160.15345 1609.333633 36.60800364 35.38070749 1.034688288 0.014809533
8 3930 3710 2616.100342 88.691177 2580.769531 152.096619 187.630173 21900 27.710829 0.96424 0.931313 0.995857 17.200253 0.840672 1666.329956 55.235294 1452.878296 121.673668 184.723648 19700 27.710829 0.9571 0.963875 0.997253 13.695075 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 2527.409165 1611.094662 42.83186637 35.41942317 1.209276226 0.082525515
9 4170 3710 2824.140869 105.985291 2841.712646 233.190109 187.969162 20600 17.794792 0.956454 0.928459 0.99305 12.110895 0.840056 1662.271729 84.117645 1489.644531 232.376526 187.460449 17300 17.794792 0.957524 0.961922 0.991798 7.153355 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 2718.155578 1578.154084 46.06443551 34.69523464 1.327687678 0.123095925
10 4420 3700 1466.074463 107.308823 1629.093506 199.480988 188.813965 21500 18.953823 0.9613 0.954735 0.994141 7.349445 0.83852 1032.461914 84.779411 957.667114 179.059219 184.551254 18400 18.953823 0.960321 0.971725 0.995926 5.766036 0.84627 1 1 1 1 1 1 1 1 1 1 1 1 1 1358.76564 947.682503 23.02692778 20.83450985 1.105230118 0.043452711
11 4680 3700 1516.806885 140.544113 1560.357788 318.015503 189.822784 20200 28.468979 0.965003 0.952095 0.992416 4.7696 0.836686 1284.891357 47.838234 1223.211792 122.131149 180.364288 18400 28.468979 0.940853 0.964897 0.995964 10.520587 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 1376.262772 1237.053123 23.32345073 27.19623439 0.857598534 -0.06671597
12 4920 3700 1340.165894 83.764709 1224.669067 159.849289 191.824478 22900 18.953823 0.967066 0.961678 0.995003 8.383934 0.833046 1128.018066 52.75 1071.519043 120.115662 185.411636 22100 18.953823 0.96484 0.965988 0.996582 9.391099 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 1256.401185 1075.268066 21.2921629 23.63943941 0.900705069 -0.045417393
13 5190 3710 4379.739746 100.514709 3924.051514 196.654221 185.754669 22300 37.67128 0.969665 0.907089 0.99511 22.271273 0.844082 3055.580811 56.323528 2416.76123 143.382843 183.860046 19800 37.67128 0.945069 0.942009 0.9953 21.310645 0.847527 1 1 1 1 1 1 1 1 1 1 1 1 1 4279.225037 2999.257283 72.51979517 65.93775364 1.099822047 0.041322421
14 5440 3710 1510.358154 105.617645 1356.145142 234.921906 188.645309 21500 37.67128 0.963917 0.966599 0.993309 6.429193 0.838827 1202.430054 45.955883 938.925171 123.728569 182.295258 18600 37.67128 0.950633 0.975609 0.996681 9.71829 0.850372 1 1 1 1 1 1 1 1 1 1 1 1 1 1404.740509 1156.474171 23.8060614 25.42473078 0.936334847 -0.028568814
15 5680 3700 5157.659668 65.338234 3804.910156 134.744156 187.630173 23200 28.468979 0.95966 0.913818 0.997009 38.277428 0.840672 3899.630371 59.588234 2861.523682 157.206223 182.295258 23000 28.468979 0.948156 0.924751 0.994171 24.805827 0.850372 1 1 1 1 1 1 1 1 1 1 1 1 1 5092.321434 3840.042137 86.29929582 84.42215138 1.022235212 0.009550837
16 5940 3700 3884.47998 74.852943 3269.344482 172.787094 189.822784 22500 38.232422 0.967626 0.925423 0.99456 22.481309 0.836686 2934.58252 48.323528 2253.961182 126.716209 187.290573 20600 38.232422 0.95577 0.946457 0.997406 23.158699 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 3809.627037 2886.258992 64.56154328 63.45352078 1.017461954 0.007518179
17 6180 3700 2063.054443 117.264709 2095.707275 192.573502 188.645309 22000 28.468979 0.956438 0.944679 0.994873 10.713075 0.838827 1675.032471 58.176472 1347.789673 133.08284 179.302277 18500 28.468979 0.925216 0.966866 0.996056 12.58639 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 1945.789734 1616.855999 32.97519334 35.5460844 0.927674423 -0.032604417
18 6410 3690 3279.990723 118.220589 2196.549072 193.619476 190.32518 21400 18.724445 0.964669 0.939789 0.994583 16.940397 0.835772 2382.794434 90.691177 1723.783569 198.128281 190.32518 21400 18.724445 0.969577 0.947006 0.994415 12.026524 0.835772 1 1 1 1 1 1 1 1 1 1 1 1 1 3161.770134 2292.103257 53.58234739 50.39118875 1.063327711 0.026667132
19 2180 3950 1816.808472 113.367645 2511.809326 286.768127 184.895889 18800 28.468979 0.960297 0.953873 0.994514 6.335462 0.845644 894.724548 50.029411 920.742859 139.354584 185.239883 16700 28.468979 0.957427 0.974586 0.996384 6.420489 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 1703.440827 844.695137 28.86811953 18.57036412 1.554526306 0.191598076
20 2430 3960 2111.898193 43.941177 1918.644531 114.946045 185.925949 21600 27.710829 0.94979 0.954773 0.996735 18.372952 0.843771 1476.0802 50.941177 1284.289551 123.309692 188.307541 18700 27.710829 0.961538 0.965088 0.996635 11.970512 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 2067.957016 1425.139023 35.04555566 31.33124535 1.118549718 0.048655293

Total number of rows: 5184

Table truncated, full table size 1747 Kbytes.




Supplementary data files not provided
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