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Sample GSM172474 Query DataSets for GSM172474
Status Public on Jul 02, 2007
Title Developmental regulation of the transcriptome of chicken retinal pigment epithelium (E18, replicate 4)
Sample type RNA
 
Source name Retinal Pigment Epithelium
Organism Gallus gallus
Characteristics Isolated from chicken embryos on embryoinic day 18 (E18)
Extracted molecule total RNA
Extraction protocol RNeasy Protect kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description E18, replicate 4
Data processing signal value generated from global scaling
 
Submission date Feb 28, 2007
Last update date Jul 02, 2007
Contact name Lawrence J Rizzolo
E-mail(s) [email protected]
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE7176 Develomental Time Course of the Retinal Pigment Epithelial Transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Detection
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 532.264 P 0.000753643
AFFX-BioB-M_at 710.483 P 4.42873e-05
AFFX-BioB-3_at 564.329 P 9.4506e-05
AFFX-BioC-5_at 1783.32 P 4.42873e-05
AFFX-BioC-3_at 1767.37 P 4.42873e-05
AFFX-BioDn-5_at 3634.06 P 4.42873e-05
AFFX-BioDn-3_at 7794.07 P 7.00668e-05
AFFX-CreX-5_at 17138.3 P 5.16732e-05
AFFX-CreX-3_at 22383.1 P 4.42873e-05
AFFX-DapX-5_at 3.1236 A 0.891041
AFFX-DapX-M_at 21.287 A 0.455413
AFFX-DapX-3_at 16.036 A 0.631562
AFFX-LysX-5_at 5.22524 A 0.645547
AFFX-LysX-M_at 14.2738 A 0.783476
AFFX-LysX-3_at 21.9636 A 0.156732
AFFX-PheX-5_at 4.14869 A 0.953518
AFFX-PheX-M_at 2.80612 A 0.984817
AFFX-PheX-3_at 11.503 A 0.672921
AFFX-ThrX-5_at 3.00807 A 0.891021
AFFX-ThrX-M_at 15.5741 A 0.60308

Total number of rows: 38535

Table truncated, full table size 1489 Kbytes.




Supplementary file Size Download File type/resource
GSM172474.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM172474.EXP.gz 345 b (ftp)(http) EXP
Processed data included within Sample table

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