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Sample GSM1726 Query DataSets for GSM1726
Status Public on Jun 27, 2002
Title Serum 0.25
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 15 minutes
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 128
 
Submission date May 24, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL168
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 994 891 755 229 526 604 263 867 .75 0 -1.76 0 0 3.891 3.388 .257 .295 4.13 45 52 63 70 -1.76
2 942 663 4678 4126 552 634 4743 5377 .94 0 2.839 0 0 .161 .14 6.223 7.154 .13 45 52 71 78 2.839
3 1062 7004 8402 7831 571 656 9001 9657 .95 0 .362 0 0 .894 .778 1.118 1.285 .98 45 52 80 87 .362
4 910 4289 3557 3027 530 609 3479 4088 .96 0 -.302 0 0 1.417 1.233 .706 .811 1.52 45 52 88 95 -.302
5 965 4954 7006 6445 561 644 7408 8052 .97 0 .58 0 0 .769 .669 1.301 1.495 .82 45 52 97 104 .58
6 1111 3471 3333 2716 617 709 3122 3831 .95 0 -.153 0 0 1.278 1.112 .782 .899 1.42 45 52 105 112 -.153
7 1002 2806 3205 2655 550 632 3051 3683 .96 0 .121 0 0 1.057 .92 .946 1.087 1.1 45 52 114 121 .121
8 951 2870 3919 3301 618 710 3794 4504 .96 0 .403 0 0 .869 .756 1.15 1.322 .87 45 52 122 129 .403
9 1014 392 760 271 489 562 311 873 .49 0 -.334 0 0 1.446 1.26 .691 .793 .73 45 52 131 138 -.334
10 1113 10841 16544 15941 603 693 18323 19016 .98 0 .757 0 0 .68 .592 1.47 1.69 .75 45 52 139 146 .757
11 1013 257 698 160 538 618 184 802 .47 0 -.482 0 0 1.606 1.397 .623 .716 1.05 45 52 148 155 -.482
12 914 386 684 141 543 624 162 786 .79 0 -1.253 0 0 2.738 2.383 .365 .42 2.05 45 52 156 163 -1.253
13 1133 2948 3826 3255 571 656 3741 4397 .96 0 .344 0 0 .906 .788 1.104 1.269 .93 45 52 165 172 .344
14 921 475 708 226 482 554 259 813 .66 0 -.875 0 0 2.102 1.834 .476 .545 1.68 45 52 173 180 -.875
15 983 825 1327 807 520 597 928 1525 .92 0 .17 0 0 1.022 .889 .978 1.125 1.09 45 52 182 189 .17
16 1026 6461 7163 6617 546 627 7606 8233 .97 0 .235 0 0 .976 .849 1.024 1.177 1.05 45 52 190 197 .235
17 973 480 839 324 515 591 373 964 .78 0 -.364 0 0 1.481 1.287 .675 .777 1.41 45 52 199 206 -.364
18 1002 400 744 240 504 579 276 855 .74 0 -.535 0 0 1.667 1.449 .6 .69 1.7 45 52 207 214 -.535
19 1066 1316 1716 1164 552 634 1338 1972 .94 0 .024 0 0 1.131 .984 .884 1.017 1.08 45 52 216 223 .024
20 1054 1747 1991 1462 529 608 1680 2288 .94 0 -.056 0 0 1.195 1.04 .837 .962 1.23 45 52 224 231 -.056

Total number of rows: 10176

Table truncated, full table size 997 Kbytes.




Supplementary data files not provided
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