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Sample GSM1727 Query DataSets for GSM1727
Status Public on Jun 27, 2002
Title Serum 02
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 2 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 129
 
Submission date May 24, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL168
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 943 563 765 189 576 654 215 869 .35 0 -1.389 0 0 2.979 2.619 .336 .382 1.49 44 51 63 70 -1.389
2 866 606 3649 3086 563 639 3507 4146 .82 0 2.533 0 0 .196 .173 5.092 5.787 .1 44 51 71 78 2.533
3 976 6029 8750 8131 619 703 9240 9943 .96 0 .616 0 0 .741 .652 1.349 1.533 .82 44 51 79 86 .616
4 944 2986 3170 2620 550 625 2977 3602 .94 0 -.004 0 0 1.14 1.003 .877 .997 1.16 44 51 88 95 -.004
5 947 3119 5211 4561 650 738 5183 5921 .95 0 .733 0 0 .684 .602 1.462 1.662 .69 44 51 96 103 .733
6 1033 2171 2892 2287 605 687 2599 3286 .95 0 .26 0 0 .949 .835 1.053 1.197 .97 44 51 105 112 .26
7 965 1704 2075 1478 597 678 1679 2357 .93 0 -.021 0 0 1.153 1.015 .867 .985 1.13 44 51 113 120 -.021
8 921 1693 2756 2135 621 705 2426 3131 .95 0 .519 0 0 .793 .698 1.261 1.433 .77 44 51 122 129 .519
9 974 314 710 203 507 576 230 806 .34 0 -.449 0 0 1.547 1.365 .646 .732 .6 44 51 130 137 -.449
10 1045 8663 13395 12826 569 646 14575 15221 .96 0 .751 0 0 .675 .594 1.481 1.682 .7 44 51 139 146 .751
11 918 301 652 141 511 580 160 740 .07 0 -.912 0 0 2.135 1.881 .468 .532 .13 44 51 147 154 -.912
12 958 293 621 184 437 496 209 705 .18 0 -.487 0 0 1.592 1.402 .628 .713 .32 44 51 156 163 -.487
13 913 2252 2852 2260 592 672 2568 3240 .95 0 .189 0 0 .996 .877 1.004 1.14 1.02 44 51 164 171 .189
14 1011 324 711 185 526 597 210 807 .23 0 -.626 0 0 1.751 1.543 .571 .648 .45 44 51 173 180 -.626
15 974 580 946 386 560 636 439 1075 .75 0 -.402 0 0 1.503 1.321 .666 .757 1.06 44 51 181 188 -.402
16 914 4547 4636 4063 573 651 4617 5268 .94 0 .022 0 0 1.119 .985 .894 1.015 1.16 44 51 190 197 .022
17 920 467 778 231 547 621 263 884 .51 0 -.828 0 0 2.022 1.776 .495 .563 1.04 44 51 198 205 -.828
18 967 342 700 172 528 600 195 795 .59 0 -.811 0 0 1.988 1.754 .503 .57 1.19 44 51 207 214 -.811
19 1019 1008 1655 1086 569 646 1234 1880 .93 0 .292 0 0 .928 .817 1.077 1.224 .86 44 51 215 222 .292
20 1097 1182 1486 909 577 655 1033 1688 .88 0 -.194 0 0 1.3 1.144 .769 .874 1.21 44 51 224 231 -.194

Total number of rows: 10176

Table truncated, full table size 998 Kbytes.




Supplementary data files not provided
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