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GEO accession:
Sample GSM180085
Query DataSets for GSM180085
Status
Public on Oct 05, 2007
Title
SD, control, rat 13
Sample type
RNA
Source name
heart muscle
Organism
Rattus norvegicus
Characteristics
strain: TGR(mRen-2)27 (Ren-2) on Sprague Dawley background; gender: male; age: 10 weeks; tissue: biopsy from cardiac left ventricle
Biomaterial provider
University of Maastricht, Experimental and Molecular Cardiology, Blanche Schroen/ Arie van Erk/ Yigal Pinto
Treatment protocol
none
Growth protocol
animals were kept on a standard diet
Extracted molecule
total RNA
Extraction protocol
Picopure RNA isolation kit
Label
biotin
Label protocol
affymetrix 2-cycle cDNA synthesis kit
Hybridization protocol
see exp file
Scan protocol
see exp file
Description
none
Data processing
mas5.0
Submission date
Apr 03, 2007
Last update date
Oct 04, 2007
Contact name
Arie van Erk
E-mail(s)
[email protected]
Phone
+31 (043) 3882913
Organization name
University Maastricht
Department
BiGCaT Bioinformatics
Lab
Experimental and Molecular Cardiology
Street address
PO Box 616
City
Maastricht
ZIP/Postal code
6200MD
Country
Netherlands
Platform ID
GPL1355
Series (1)
GSE4286
Making a predictive heart failure expression profile in Ren2 rat left ventricles
Data table header descriptions
ID_REF
VALUE
signal value
ABS_CALL
detection call
DETECTION P-VALUE
detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
287.98
P
0.0138105
AFFX-BioB-M_at
351.389
P
0.00110197
AFFX-BioB-3_at
304.529
P
0.00844047
AFFX-BioC-5_at
1085.63
P
0.000445901
AFFX-BioC-3_at
902.173
P
0.000258358
AFFX-BioDn-5_at
2241.18
P
0.000662269
AFFX-BioDn-3_at
5669.2
P
0.000856509
AFFX-CreX-5_at
11909.3
P
5.16732e-05
AFFX-CreX-3_at
11202
P
4.42873e-05
AFFX-DapX-5_at
83.7298
M
0.0629293
AFFX-DapX-M_at
1217.15
P
0.00159257
AFFX-DapX-3_at
2220.82
P
6.02111e-05
AFFX-LysX-5_at
65.2429
P
0.0138105
AFFX-LysX-M_at
261.201
M
0.0542134
AFFX-LysX-3_at
829.741
P
5.16732e-05
AFFX-PheX-5_at
71.0624
A
0.108979
AFFX-PheX-M_at
175.256
P
0.0032123
AFFX-PheX-3_at
429.227
P
0.00401721
AFFX-ThrX-5_at
40.8643
A
0.712257
AFFX-ThrX-M_at
182.898
P
0.026111
Total number of rows:
31099
Table truncated, full table size
932 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM180085.CHP.gz
8.1 Mb
(ftp)
(http)
CHP
GSM180085.EXP.gz
499 b
(ftp)
(http)
EXP
gsm180085.cel.gz
4.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
Processed data provided as supplementary file
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