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| Status |
Public on Feb 15, 2008 |
| Title |
O#32 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
Female, 14 months of age
|
| Biomaterial provider |
COG cell bank
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy
|
| Label |
biotin
|
| Label protocol |
Enzo BioArray HighYield RNA transcript labeling kit
|
| |
|
| Hybridization protocol |
Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450
|
| Scan protocol |
M10 scanner, Pixel size 1.56, Filter 570
|
| Description |
RER: rapid early responder = patient with M1 marrow at Day 7
|
| Data processing |
MAS 5.0
|
| |
|
| Submission date |
Apr 03, 2007 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Deepa Bhojwani |
| E-mail(s) |
[email protected]
|
| Organization name |
New York University School of Medicine
|
| Department |
Pediatric Hematology Oncology
|
| Street address |
Smilow Research Building 1206-B, 522 First Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE7440 |
Early Response and Outcome in High-Risk Childhood Acute Lymphoblastic Leukemia: A Children’s Oncology Group Study |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
Signal |
| ABS_CALL |
indicating whether the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
|
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
537.855 |
P |
0.000224668 |
| AFFX-BioB-M_at |
681.397 |
P |
5.16732e-05 |
| AFFX-BioB-3_at |
392.506 |
P |
0.000146581 |
| AFFX-BioC-5_at |
2464.81 |
P |
5.16732e-05 |
| AFFX-BioC-3_at |
1892.5 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
14364.7 |
P |
4.42873e-05 |
| AFFX-BioDn-3_at |
22609.4 |
P |
4.42873e-05 |
| AFFX-CreX-5_at |
25024.7 |
P |
5.16732e-05 |
| AFFX-CreX-3_at |
28018.4 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
31.9371 |
A |
0.275146 |
| AFFX-DapX-M_at |
7.7902 |
A |
0.824672 |
| AFFX-DapX-3_at |
3.45507 |
A |
0.969035 |
| AFFX-LysX-5_at |
2.71405 |
A |
0.9273 |
| AFFX-LysX-M_at |
9.93083 |
A |
0.760937 |
| AFFX-LysX-3_at |
7.94146 |
A |
0.749204 |
| AFFX-PheX-5_at |
10.7924 |
A |
0.737173 |
| AFFX-PheX-M_at |
38.8816 |
A |
0.559354 |
| AFFX-PheX-3_at |
13.1349 |
A |
0.51489 |
| AFFX-ThrX-5_at |
6.46132 |
A |
0.9273 |
| AFFX-ThrX-M_at |
7.60937 |
A |
0.772364 |
Total number of rows: 54675
Table truncated, full table size 1607 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM180164.CEL.gz |
8.0 Mb |
(ftp)(http) |
CEL |
| GSM180164.CHP.gz |
13.1 Mb |
(ftp)(http) |
CHP |
| GSM180164.EXP.gz |
369 b |
(ftp)(http) |
EXP |
| Processed data provided as supplementary file |
| Processed data included within Sample table |
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