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Sample GSM1821 Query DataSets for GSM1821
Status Public on Jun 27, 2002
Title E3:_U937_wild-type_2h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E3: U937 salm 2h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
salm 2h
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shv013
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL182
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 0 0 276 105 105 1 0 0 106 106 .962 0 -1.38 .371 10 96 2.629 2.602 .38 .384 .388 471 80 39 50 41 52 -1.38
2 1 0 153 146 146 1 0 0 147 147 .963 0 -.053 .966 10 10 1.048 1.037 .954 .964 .92 344 80 40 50 57 67 -.053
3 0 0 57 48 48 1 0 0 48 48 .942 0 -.233 .852 97 97 1.188 1.176 .842 .851 .81 336 80 40 50 72 82 -.233
4 0 0 28 50 50 1 0 0 51 51 .867 0 .851 1.871 97 10 .56 .554 1.786 1.804 1.555 419 80 39 50 86 97 .851
5 1 0 80 133 133 1 0 0 134 134 .956 0 .748 1.702 10 10 .602 .595 1.663 1.679 1.655 358 80 40 50 103 113 .748
6 0 0 386 184 184 1 0 0 186 186 .977 0 -1.054 .477 10 10 2.098 2.077 .477 .481 .477 335 80 40 50 118 128 -1.054
7 0 0 39 26 26 1 0 0 26 26 .862 0 -.57 .625 83 78 1.5 1.485 .667 .673 .584 407 80 39 50 131 142 -.57
8 0 0 33 37 37 1 0 0 37 37 .951 0 .18 1.165 81 71 .892 .883 1.121 1.133 1.173 422 80 39 50 147 158 .18
9 1 0 1387 262 262 1 0 0 265 265 .977 0 -2.39 .187 10 10 5.294 5.241 .189 .191 .194 347 80 40 50 163 173 -2.39
10 1 0 75 52 52 1 0 0 53 53 .921 0 -.514 .692 98 98 1.442 1.428 .693 .7 .645 357 80 40 50 178 188 -.514
11 0 0 55 245 245 1 0 0 247 247 .944 0 2.17 4.565 10 10 .224 .222 4.455 4.5 4.015 276 52 40 49 193 202 2.17
12 0 0 374 103 103 1 0 0 104 104 .948 0 -1.846 .278 10 98 3.631 3.595 .275 .278 .271 352 80 40 50 207 217 -1.846
13 0 0 54 34 34 1 0 0 34 34 .883 0 -.653 .639 98 98 1.588 1.572 .63 .636 .566 384 80 39 50 222 233 -.653
14 1 0 1607 283 283 1 0 0 286 286 .983 0 -2.491 .178 10 10 5.678 5.622 .176 .178 .177 407 80 38 49 236 247 -2.491
15 1 0 223 125 125 1 0 0 126 126 .963 0 -.821 .558 98 10 1.784 1.766 .561 .566 .542 387 80 39 50 251 262 -.821
16 0 0 123 186 186 0 0 0 188 188 .977 0 .611 1.541 98 10 .661 .655 1.512 1.527 1.454 298 80 40 50 267 277 .611
17 0 0 2111 959 959 1 0 0 969 969 .988 0 -1.124 .452 98 98 2.201 2.179 .454 .459 .446 401 120 38 50 281 293 -1.124
18 0 0 59 137 137 1 0 0 138 138 .926 0 1.23 2.5 93 10 .431 .426 2.322 2.345 1.994 308 80 39 49 297 307 1.23
19 0 0 357 94 94 1 0 0 95 95 .966 0 -1.911 .256 10 98 3.798 3.76 .263 .266 .267 333 80 39 49 312 322 -1.911
20 0 0 119 101 101 1 0 0 102 102 .958 0 -.222 .838 98 10 1.178 1.166 .849 .857 .823 342 80 39 49 327 337 -.222

Total number of rows: 24192

Table truncated, full table size 2632 Kbytes.




Supplementary data files not provided
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