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Sample GSM189425 Query DataSets for GSM189425
Status Public on Jul 31, 2007
Title F1
Sample type RNA
 
Source name F1
Organism Gallus gallus
Characteristics Gallus gallus - age:55weekdev.stage (Boyes et al. Plant Cell 2001):f1-a (24 hours before ovulation)
Treatment protocol no treatment
Growth protocol ovary - light 14 L _ 10 D - 14h and dark during 10h food : ad libitum aliment standard, pondeuse 5S temperature: 20degreeC
Extracted molecule total RNA
Extraction protocol F1:17.2ug.
Label Biotin
Label protocol labelling Biotin direct, amplification=yes, RNAa 20 ug.
 
Hybridization protocol labelled extract quantity: 15ug
Scan protocol GCOS, Biotin:pmt voltage 570nm,650V,laser power 1
Description The aim of this study was to assess the impact of oocyte competence on subsequent fertility. Based on knowledge already accessible in mammals and on bioinformatics tools including the chicken genome sequence, we focused on the expression of genes involved in the processes of fertilization and of early embryo development. The study was performed using two complementary approaches, a descriptive study of standard laying hens and then a differential study performed with hens from experimental lines expressing broad variations of achieved fertility :approximately 20per cent.A differential kinetic study is performed on INRA lines selected on the basis of their fertility potential in purpose of hopefully access gene markers of fertility performance.
Data processing The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).
 
Submission date May 15, 2007
Last update date May 16, 2007
Contact name sandrine balzergue
Organization name INRA
Lab IRHS
Street address Rue G. Morel
City Beaucouze
ZIP/Postal code 49000
Country France
 
Platform ID GPL3213
Series (1)
GSE7805 affy_fertility_chicken_exp169

Data table header descriptions
ID_REF ID number
VALUE Normalized data by GCRMA

Data table
ID_REF VALUE
AB112960.CDS1.S1_at 2.813201636
AF004856.CDS1.S1_s_at 2.864957631
AF004857.CDS1.S1_s_at 2.586200927
AF004857.CDS2.S1_s_at 2.181548145
AF004857.CDS3.S1_s_at 2.596877942
AF059716.CDS1.S1_at 3.012462323
AF059717.CDS1.S1_at 2.798741651
AF059721.CDS1.S1_at 2.251849853
AF059724.CDS1.S1_at 2.721669046
AF059725.CDS1.S1_at 2.217437616
AF176590.CDS1.S1_s_at 2.50894308
AF176591.CDS1.S1_s_at 2.364898625
AF176592.CDS1.S1_s_at 2.98812453
AF176592.CDS2.S1_s_at 3.633909785
AF218359.CDS1.S1_at 2.273843923
AF218359.CDS2.S1_at 2.218159369
AF218359.CDS3.S1_at 2.47325586
AF243438.CDS10.S1_s_at 2.864471273
AF243438.CDS11.S1_s_at 2.260551539
AF243438.CDS12.S1_s_at 2.568276672

Total number of rows: 38535

Table truncated, full table size 1190 Kbytes.




Supplementary file Size Download File type/resource
GSM189425.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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