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Sample GSM189780 Query DataSets for GSM189780
Status Public on May 05, 2009
Title Healthy Twin 24b
Sample type RNA
 
Source name Intestinal mucosa biopsy from healthy human individuals
Organism Homo sapiens
Characteristics other: pair 24
gender: female
age: 36
genotype/variation: dizygotic twin
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy mini extraction was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared using Message Amp II-Biotin (Ambion) and further processed using the standard Affymetrix protocol (Affymetrix manual 2005)
 
Hybridization protocol Following fragmentation, 15 µg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 2.0 Plus Array (Affymetrix GeneChipHybridization Oven 640). GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3029
Description Gene expression data from healthy human twins (mucosal biopsies), female, age: 36b
Data processing Sample data was processed using GCOS 1.3.0 (Affymetrix default settings) and normalized using GCRMA
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name Robert Haesler
E-mail(s) [email protected]
Phone +49 (0) 431 597 5754
Organization name University Clinic of Schleswig Holstein
Department IKMB / 1st Dept. of Medicine
Lab Functional Genomics Platform
Street address Schittenhelmstr. 12
City Kiel
ZIP/Postal code 24105
Country Germany
 
Platform ID GPL570
Series (1)
GSE7821 Expression data from human intestinal biopsies
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE GCOS 1.3 / GCRMA calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 9.399120511 P 0.000218889
1053_at 6.282679556 P 0.009985438
117_at 2.459086366 A 0.117160484
121_at 3.710957513 P 0.001891623
1255_g_at 2.18492344 A 0.837064981
1294_at 3.691952793 P 0.008689182
1316_at 2.719861538 P 0.019303527
1320_at 2.613911755 A 0.64133215
1405_i_at 9.488389391 P 0.000612512
1431_at 2.419462289 A 0.438350648
1438_at 5.487965718 P 0.001141097
1487_at 8.323515172 P 0.00653198
1494_f_at 2.196201065 M 0.054470435
1552256_a_at 6.657706653 P 0.000732422
1552257_a_at 8.762692505 P 0.000244141
1552258_at 2.392054573 A 0.625244141
1552261_at 2.679431207 A 0.219482005
1552263_at 4.291560847 P 0.00292969
1552264_a_at 6.817446661 P 0.000732422
1552266_at 2.85748704 P 0.0141602

Total number of rows: 54675

Table truncated, full table size 1934 Kbytes.




Supplementary file Size Download File type/resource
GSM189780.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM189780.CHP.gz 318.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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