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Status
Public on Mar 28, 2004
Title
Mouse Kidney Male 3
Sample type
RNA
Source name
Mouse Kidney
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
177.9
P
0.026111
AFFX-BioB-M_at
212.6
P
0.002867
AFFX-BioB-3_at
131.3
P
0.021902
AFFX-BioC-5_at
425.3
P
0.000258
AFFX-BioC-3_at
247.5
P
0.000390
AFFX-BioDn-5_at
306.4
P
0.000195
AFFX-BioDn-3_at
2533.3
P
0.000662
AFFX-CreX-5_at
2751.9
P
0.000044
AFFX-CreX-3_at
4817.9
P
0.000044
AFFX-DapX-5_at
13.6
A
0.300606
AFFX-DapX-M_at
42.2
P
0.036569
AFFX-DapX-3_at
6.0
A
0.724854
AFFX-LysX-5_at
19.2
A
0.529760
AFFX-LysX-M_at
20.9
A
0.631562
AFFX-LysX-3_at
16.2
A
0.185131
AFFX-PheX-5_at
5.7
A
0.814869
AFFX-PheX-M_at
5.5
A
0.737173
AFFX-PheX-3_at
50.4
A
0.354453
AFFX-ThrX-5_at
9.0
A
0.883887
AFFX-ThrX-M_at
36.9
A
0.227636
Total number of rows: 22690 Table truncated, full table size 629 Kbytes .Supplementary data files not provided