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Sample GSM19246 Query DataSets for GSM19246
Status Public on Mar 28, 2004
Title Mouse Kidney Female 1 (technical replicate)
Sample type RNA
 
Source name Mouse Kidney
Organism Mus musculus
Extracted molecule total RNA
 
Description Triple selected polyA RNA for liver, kidney, ovary,
testis, was obtained from Ambion (Austin, TX). Total
RNA was obtained form Ambion for hypothalamus samples.
All RNA samples had an agilent ratio greater
than 1 indicating that degradation had not occurred.
All RNA samples were prepared from a pool of 10
different animals. The total RNA samples were
labeled for hybridization onto the microarray according
to affymetrix protocols listed at:
http://keck.med.yale.edu/affymetrix/protocols
Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
 
Submission date Mar 26, 2004
Last update date May 27, 2005
Contact name Joel Rozowsky
E-mail(s) [email protected]
Phone 203-432-5405
Organization name Yale University
Department Molecular Biophysics & Biochemistry
Lab Gerstein Lab
Street address 266 Whitney Ave, Bass 437
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL339
Series (1)
GSE1148 Sex Specific Transciption in Mouse Tissues

Data table header descriptions
ID_REF
VALUE MAS 5.0 Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 186.2 P 0.008440
AFFX-BioB-M_at 356.3 P 0.000195
AFFX-BioB-3_at 134.1 P 0.001248
AFFX-BioC-5_at 456.4 P 0.000169
AFFX-BioC-3_at 387.9 P 0.000081
AFFX-BioDn-5_at 377.6 P 0.000070
AFFX-BioDn-3_at 2303.3 P 0.000225
AFFX-CreX-5_at 3628.8 P 0.000044
AFFX-CreX-3_at 6399.9 P 0.000044
AFFX-DapX-5_at 18.7 A 0.275146
AFFX-DapX-M_at 30.6 A 0.102165
AFFX-DapX-3_at 5.1 A 0.824672
AFFX-LysX-5_at 15.1 A 0.368438
AFFX-LysX-M_at 8.0 A 0.559354
AFFX-LysX-3_at 11.2 A 0.250796
AFFX-PheX-5_at 5.2 A 0.824672
AFFX-PheX-M_at 1.9 A 0.824672
AFFX-PheX-3_at 22.5 A 0.440646
AFFX-ThrX-5_at 4.0 A 0.904333
AFFX-ThrX-M_at 13.7 A 0.529760

Total number of rows: 22690

Table truncated, full table size 628 Kbytes.




Supplementary data files not provided

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