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Status
Public on Mar 28, 2004
Title
Mouse Kidney Female 3
Sample type
RNA
Source name
Mouse Kidney
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
221.7
P
0.006187
AFFX-BioB-M_at
358.6
P
0.001102
AFFX-BioB-3_at
179.5
P
0.006871
AFFX-BioC-5_at
604.0
P
0.000147
AFFX-BioC-3_at
393.0
P
0.000169
AFFX-BioDn-5_at
439.2
P
0.000127
AFFX-BioDn-3_at
3255.0
P
0.000340
AFFX-CreX-5_at
3637.5
P
0.000044
AFFX-CreX-3_at
6217.9
P
0.000044
AFFX-DapX-5_at
33.3
A
0.095667
AFFX-DapX-M_at
40.5
A
0.147939
AFFX-DapX-3_at
19.2
A
0.699394
AFFX-LysX-5_at
3.4
A
0.794268
AFFX-LysX-M_at
15.4
A
0.544587
AFFX-LysX-3_at
12.1
A
0.313723
AFFX-PheX-5_at
3.7
A
0.876428
AFFX-PheX-M_at
4.7
A
0.772364
AFFX-PheX-3_at
58.0
A
0.313723
AFFX-ThrX-5_at
8.4
A
0.834139
AFFX-ThrX-M_at
25.5
A
0.368438
Total number of rows: 22690 Table truncated, full table size 629 Kbytes .Supplementary data files not provided