GEO help: Mouse over screen elements for information.
Status
Public on Mar 28, 2004
Title
Mouse Testis 2 (technical replicate)
Sample type
RNA
Source name
Mouse Testis
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
251.4
P
0.002867
AFFX-BioB-M_at
467.9
P
0.000258
AFFX-BioB-3_at
247.8
P
0.001102
AFFX-BioC-5_at
670.8
P
0.000127
AFFX-BioC-3_at
531.2
P
0.000070
AFFX-BioDn-5_at
528.7
P
0.000127
AFFX-BioDn-3_at
3418.9
P
0.000258
AFFX-CreX-5_at
5657.3
P
0.000044
AFFX-CreX-3_at
9422.0
P
0.000044
AFFX-DapX-5_at
38.0
A
0.083592
AFFX-DapX-M_at
40.7
P
0.046482
AFFX-DapX-3_at
3.0
A
0.963431
AFFX-LysX-5_at
10.3
A
0.340661
AFFX-LysX-M_at
14.2
A
0.804734
AFFX-LysX-3_at
27.2
A
0.123572
AFFX-PheX-5_at
2.7
A
0.953518
AFFX-PheX-M_at
21.9
A
0.588620
AFFX-PheX-3_at
17.5
A
0.529760
AFFX-ThrX-5_at
8.2
A
0.852061
AFFX-ThrX-M_at
22.5
A
0.382599
Total number of rows: 22690 Table truncated, full table size 628 Kbytes .Supplementary data files not provided