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Status
Public on Mar 28, 2004
Title
Mouse Ovary 1 (technical replicate)
Sample type
RNA
Source name
Mouse Ovary
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
134.4
A
0.067678
AFFX-BioB-M_at
249.2
P
0.000972
AFFX-BioB-3_at
119.2
P
0.013811
AFFX-BioC-5_at
396.9
P
0.000169
AFFX-BioC-3_at
260.3
P
0.000972
AFFX-BioDn-5_at
292.5
P
0.000390
AFFX-BioDn-3_at
2174.9
P
0.000754
AFFX-CreX-5_at
2883.6
P
0.000044
AFFX-CreX-3_at
5257.2
P
0.000044
AFFX-DapX-5_at
31.9
A
0.216524
AFFX-DapX-M_at
45.7
A
0.195266
AFFX-DapX-3_at
10.4
A
0.659339
AFFX-LysX-5_at
24.8
A
0.470241
AFFX-LysX-M_at
7.8
A
0.804734
AFFX-LysX-3_at
27.7
P
0.030976
AFFX-PheX-5_at
4.7
A
0.927300
AFFX-PheX-M_at
3.7
A
0.904333
AFFX-PheX-3_at
73.1
A
0.300606
AFFX-ThrX-5_at
5.7
A
0.932322
AFFX-ThrX-M_at
26.5
A
0.485110
Total number of rows: 22690 Table truncated, full table size 630 Kbytes .Supplementary data files not provided