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Status
Public on Mar 28, 2004
Title
Mouse Ovary 2 (technical replicate)
Sample type
RNA
Source name
Mouse Ovary
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
200.9
P
0.023929
AFFX-BioB-M_at
281.6
P
0.001593
AFFX-BioB-3_at
147.3
P
0.009337
AFFX-BioC-5_at
507.8
P
0.000225
AFFX-BioC-3_at
319.5
P
0.000297
AFFX-BioDn-5_at
332.4
P
0.000258
AFFX-BioDn-3_at
2619.7
P
0.000509
AFFX-CreX-5_at
3282.6
P
0.000044
AFFX-CreX-3_at
6301.2
P
0.000044
AFFX-DapX-5_at
30.6
A
0.175328
AFFX-DapX-M_at
45.6
A
0.067678
AFFX-DapX-3_at
7.9
A
0.834139
AFFX-LysX-5_at
4.7
A
0.672921
AFFX-LysX-M_at
8.2
A
0.749204
AFFX-LysX-3_at
26.0
A
0.175328
AFFX-PheX-5_at
6.3
A
0.814869
AFFX-PheX-M_at
18.3
A
0.712257
AFFX-PheX-3_at
67.5
A
0.227636
AFFX-ThrX-5_at
16.7
A
0.617401
AFFX-ThrX-M_at
21.4
A
0.396920
Total number of rows: 22690 Table truncated, full table size 631 Kbytes .Supplementary data files not provided