|
| Status |
Public on Jul 05, 2016 |
| Title |
scrambled shRNA rep2 |
| Sample type |
RNA |
| |
|
| Source name |
scrambled shRNA
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57Bl
shRNA: ctrl
tissue: striatum
|
| Treatment protocol |
Sterotactic injections of ASO complementary to TAF15 were performed in eight-week old female C57Bl/b mice to deplete TAF15. ASOs were delivered specifically to the striatum by intrastriatal (12.5 mg) injection (300 mg). Mice were regularly monitored for 14 days until sacrificed.
|
| Growth protocol |
eight-week old female C57Bl/b mice were grown under normal coniditons
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted by standard Trizol extraction.
|
| Label |
biotin
|
| Label protocol |
WT Terminal Labeling Kit, Affymetrix
|
| |
|
| Hybridization protocol |
Hybridization cocktails containing ~5.5 ug of fragmented and labeled DNA target were prepared and applied to GeneChip Human Splice Junction arrays. Hybridization was performed for 16 hours using the Fluidics 450 station.
|
| Scan protocol |
Arrays were scanned using the Affymetrix 3000 7G scanner and GeneChip Operating Software version 1.4 to produce .CEL intensity files.
|
| Data processing |
Data processed using Affymetrix package (Affy Power Tools) apt-probeset-summarize. Iter-plier algorithm used to quantify probesets.
|
| |
|
| Submission date |
Feb 08, 2016 |
| Last update date |
Jul 05, 2016 |
| Contact name |
Gene Yeo |
| E-mail(s) |
[email protected]
|
| Organization name |
UCSD
|
| Street address |
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
|
| Platform ID |
GPL13185 |
| Series (2) |
| GSE77699 |
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [array] |
| GSE77707 |
Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses |
|
