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GEO accession:
Sample GSM206572
Query DataSets for GSM206572
Status
Public on Jun 30, 2007
Title
NB_tum_982
Sample type
genomic
Source name
neuroblastoma tumor
Organism
Homo sapiens
Characteristics
Stage 4, MYCN nonamplified, UH, hyperdiploidy
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNA extraction protocol
Label
biotin
Label protocol
Affymetrix SNP array protocol
Hybridization protocol
Affymetrix SNP array protocol
Scan protocol
Hewlett-Packard scanner
Description
982T
Data processing
Affymetrix Gene chip 5.0 and www.dchipSNP.org (Cheng Li)
Submission date
Jun 29, 2007
Last update date
Aug 14, 2011
Contact name
Rani E. George
E-mail(s)
[email protected]
Phone
6176325281
Organization name
Dana-Farber Cancer Institute
Department
Pediatric Oncology
Lab
A. Thomas Look
Street address
Dana 322, 44 Binney St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platform ID
GPL2641
Series (1)
GSE8333
SNP array analysis of neuroblastoma tumors
Data table header descriptions
ID_REF
Signal
VALUE
LOH calls
Data table
ID_REF
Signal
VALUE
AFFX-5Q-123
8742.07
NoCall
AFFX-5Q-456
9639.31
NoCall
AFFX-5Q-789
7857.91
NoCall
AFFX-5Q-ABC
11694.7
NoCall
SNP_A-1513509
3014.65
A
SNP_A-1518411
11524.4
NoCall
SNP_A-1511066
5268.13
A
SNP_A-1517367
2457.63
AB
SNP_A-1512567
3323.93
B
SNP_A-1519604
3223.39
A
SNP_A-1507932
2377.57
NoCall
SNP_A-1519685
4092.83
B
SNP_A-1516165
5065.16
B
SNP_A-1514890
3610.22
B
SNP_A-1507580
4310.4
AB
SNP_A-1510991
4466.02
AB
SNP_A-1516205
4778.14
A
SNP_A-1512666
3191.15
NoCall
SNP_A-1512740
7359.63
B
SNP_A-1512132
2586.47
A
Total number of rows:
10208
Table truncated, full table size
244 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM206572.CEL.gz
3.0 Mb
(ftp)
(http)
CEL
GSM206572.TXT.gz
316.3 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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