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GEO accession:
Sample GSM206593
Query DataSets for GSM206593
Status
Public on Jun 30, 2007
Title
NB_tum_1100
Sample type
genomic
Source name
neuroblastoma tumor
Organism
Homo sapiens
Characteristics
Stage 4, MYCN nonamplified, UH, hyperdiploid
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNA extraction protocol
Label
biotin
Label protocol
Affymetrix SNP array protocol
Hybridization protocol
Affymetrix SNP array protocol
Scan protocol
Hewlett-Packard scanner
Description
CHOP 1100T
Data processing
Affymetrix Gene chip 5.0 and www.dchipSNP.org (Cheng Li)
Submission date
Jun 29, 2007
Last update date
Aug 14, 2011
Contact name
Rani E. George
E-mail(s)
[email protected]
Phone
6176325281
Organization name
Dana-Farber Cancer Institute
Department
Pediatric Oncology
Lab
A. Thomas Look
Street address
Dana 322, 44 Binney St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platform ID
GPL1266
Series (1)
GSE8333
SNP array analysis of neuroblastoma tumors
Data table header descriptions
ID_REF
Signal
VALUE
LOH calls
Data table
ID_REF
Signal
VALUE
AFFX-5Q-123
5655.02
NoCall
AFFX-5Q-456
2044.41
NoCall
AFFX-5Q-789
6737.67
NoCall
AFFX-5Q-ABC
5575.78
NoCall
SNP_A-1513509
280.727
B
SNP_A-1513556
292.813
A
SNP_A-1518411
688.344
AB
SNP_A-1511066
1284.43
A
SNP_A-1517367
177.766
B
SNP_A-1512567
1446.9
A
SNP_A-1519604
526.017
A
SNP_A-1507932
346.365
NoCall
SNP_A-1517835
152.491
AB
SNP_A-1519685
457.395
A
SNP_A-1516165
421.933
B
SNP_A-1514890
628.967
AB
SNP_A-1507580
1200.32
B
SNP_A-1510991
371.285
A
SNP_A-1516205
762.249
A
SNP_A-1512666
276.184
A
Total number of rows:
11564
Table truncated, full table size
276 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM206593.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM206593.txt.gz
315.1 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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