NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2095971 Query DataSets for GSM2095971
Status Public on Jul 01, 2016
Title US-1419278_MK0646+MK8669_R2
Sample type SRA
 
Source name Xenograft tumor tissue
Organism Homo sapiens
Characteristics cell line: MCF-7/AC-1
time: Post treatment (Day 28)
treatment: MK-0646+MK-8669
Extracted molecule total RNA
Extraction protocol Xenograft tumors were rapidly excised, weighed and preserved in RNA Later (Invitrogen Life Technologies, Carlsbad, CA, USA). Total RNA was isolated using Trizol reagents (Cat#15596-026, Invitrogen, Carlsbad, CA). RNA integrity was confirmed using the Agilent 2100 Bioanalyser (Agilent Technologies, USA).
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Next-generation sequencing was performed using the Illumina HiSeq 2000 platform.
RNA-seq data was analyzed with Partek Flow 3.0.
Reads were mapped to the human genome (Ensembl GRCh37) and quantified using the STAR aligner.
Aligned reads to genes using Partek E/M.
Differentially expressed genes determined using gene-specific analysis (GSA).
Genome_build: GRCh37
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample
 
Submission date Mar 22, 2016
Last update date May 15, 2019
Contact name Marc A Becker
E-mail(s) [email protected]
Phone 507-284-2511
Organization name Mayo Clinic
Department Medical Oncology
Street address 200 First St SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 
Platform ID GPL11154
Series (1)
GSE79492 Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer
Relations
BioSample SAMN04572553
SRA SRX1653252

Supplementary file Size Download File type/resource
GSM2095971_US-1419278_FPKM.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap