 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 23, 2016 |
| Title |
RNAseq-NPC-DENV-Mock-2 |
| Sample type |
SRA |
| |
|
| Source name |
hNPC
|
| Organism |
Homo sapiens |
| Characteristics |
virus: mock
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted by Trizol.
RNA-seq libraries were constructed with Illumina True-seq kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiSeq |
| |
|
| Data processing |
RNA-seq reads were aligned using tophat v2.0.8 and differential RPKM expression values were extracted using cuffdiff v2.2.1
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq gene expression value in cufflink fpkm_tracking file format
|
| |
|
| Submission date |
Apr 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Peng Jin |
| E-mail(s) |
[email protected]
|
| Phone |
4047273729
|
| Organization name |
Emory University
|
| Department |
Human Genetics
|
| Lab |
Jin Lab
|
| Street address |
615 Michael St., Rm 325
|
| City |
Atlanta |
| State/province |
Georgia |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platform ID |
GPL15520 |
| Series (1) |
| GSE80434 |
Molecular Signatures Associated with ZIKV Exposure in Human Cortical Neural Progenitors |
|
| Relations |
| BioSample |
SAMN04869872 |
| SRA |
SRX1713080 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2127241_RNAseq-NPC-DENV-Mock-2.fpkm_tracking.gz |
825.0 Kb |
(ftp)(http) |
FPKM_TRACKING |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
