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| Status |
Public on Aug 23, 2016 |
| Title |
RNAseq-NPC-ZIKVC-1 |
| Sample type |
SRA |
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| Source name |
hNPC
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| Organism |
Homo sapiens |
| Characteristics |
virus: ZIKVC
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted by Trizol.
RNA-seq libraries were constructed with Illumina True-seq kit
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiSeq |
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| Data processing |
RNA-seq reads were aligned using tophat v2.0.8 and differential RPKM expression values were extracted using cuffdiff v2.2.1
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq gene expression value in cufflink fpkm_tracking file format
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| Submission date |
Apr 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Peng Jin |
| E-mail(s) |
[email protected]
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| Phone |
4047273729
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| Organization name |
Emory University
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| Department |
Human Genetics
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| Lab |
Jin Lab
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| Street address |
615 Michael St., Rm 325
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| City |
Atlanta |
| State/province |
Georgia |
| ZIP/Postal code |
30322 |
| Country |
USA |
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| Platform ID |
GPL15520 |
| Series (1) |
| GSE80434 |
Molecular Signatures Associated with ZIKV Exposure in Human Cortical Neural Progenitors |
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| Relations |
| BioSample |
SAMN04869874 |
| SRA |
SRX1713082 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2127243_RNAseq-NPC-ZIKVC-1.fpkm_tracking.gz |
827.1 Kb |
(ftp)(http) |
FPKM_TRACKING |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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