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GEO accession:
Sample GSM22366
Query DataSets for GSM22366
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 59
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 59 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=59;Tumor.type=L;Size=3;Grade=2;Nodes=33/38;ER=Pos;PR=Pos;HER2=ID (+2);Age=70;DFS=21;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4277413
3499.0
3519.5
1.3451261257825555
6459
0.1267343
749.5
366.0
1.0918190241013574
16790
-0.6036683
200.0
79.5
0.6580788602368811
4210
0.2056573
136.0
99.0
1.1532115519500485
13392
-0.6869913
3351.0
1354.5
0.6211479752109396
1575
0.2321953
122.0
94.5
1.1746210346924044
9300
0.3456443
197.0
134.5
1.2707177096842996
5306
0.2812853
154.0
111.0
1.2152768453883611
4514
0.2677413
142.0
105.0
1.2039209955256738
8664
-0.2029543
141.0
81.0
0.8687700308070582
1645
0.2741443
235.0
145.5
1.209276407955373
13828
0.2428433
143.0
104.0
1.1833218388699913
3944
-0.2245863
128.0
76.0
0.8558406567378485
500
0.3830593
1886.0
1502.0
1.3041044584866563
21226
0.5633813
211.0
160.0
1.477728326571501
15545
-2.5080073
1489.5
116.0
0.17579826259527678
6346
-0.2032503
388.0
158.5
0.8685915113358164
4381
0.3139413
106.0
91.5
1.243098429559639
3385
-0.9627393
3882.0
1318.0
0.5130819539046115
19553
0.4159753
139.0
112.5
1.3341999680701535
Total number of rows:
22575
Table truncated, full table size
1053 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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