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GEO accession:
Sample GSM22368
Query DataSets for GSM22368
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 140
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 140 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=140;Tumor.type=L;Size=>2.0;Grade=2;Nodes=18/28;ER=Pos;PR=Pos;HER2=Neg;Age=63;DFS=43;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.2196273
3824.0
4945.5
1.1644321808186344
6459
-1.3663503
878.0
280.0
0.38787143610103086
16790
1.9372093
220.5
686.5
3.829639780642391
4210
0.1201293
186.5
159.5
1.0868321068756974
13392
0.2964783
3075.0
4029.0
1.2281424325353467
1575
0.2843613
232.0
225.0
1.217870887225073
9300
0.6896573
270.0
351.0
1.612899688071329
5306
0.3276223
194.0
192.5
1.2549435466739243
4514
0.1049323
163.5
137.5
1.0754433465778803
8664
0.4298823
207.5
222.0
1.3471232973497274
1645
0.3020103
307.0
305.0
1.2328611721878115
13828
0.5821843
218.5
261.0
1.4971135483835822
3944
0.0805673
191.0
159.0
1.0574332220109912
500
-0.1443423
2328.0
2047.5
0.9047921412870158
21226
0.3504413
426.0
444.0
1.2749506717305081
15545
-2.9089373
1660.5
182.5
0.13314436220077552
6346
0.5028033
505.0
590.5
1.4169643085148513
4381
0.2103843
177.0
161.0
1.1569957212703732
3385
-0.0737353
3245.0
3235.0
0.9501745939212518
19553
0.9247423
261.0
400.0
1.898344811988535
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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