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GEO accession:
Sample GSM22369
Query DataSets for GSM22369
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 180
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 180 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=180;Tumor.type=D;Size=1.6;Grade=2;Nodes=2/19;ER=Pos;PR=Pos;HER2=Neg ;Age=69;DFS=169;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3442273
5055.0
7628.5
1.269470751624072
6459
-0.9850063
867.0
344.0
0.5052235832492574
16790
0.0940133
374.0
298.0
1.0673347409449718
4210
0.2220513
160.0
129.0
1.1663904962925407
13392
-0.6018113
2697.0
1761.5
0.6589262692928954
1575
0.2571273
185.5
155.5
1.1950967975674076
9300
0.2192403
212.5
175.5
1.1641204398708536
5306
-0.1341863
181.0
114.0
0.9111840183905859
4514
-0.0302683
173.0
117.0
0.9792382947109702
8664
1.6631803
171.0
395.0
3.1671395588726607
1645
0.6481423
352.5
418.0
1.5671488780907188
13828
0.6557623
198.0
223.0
1.5754476787717913
3944
-0.0648933
168.0
110.5
0.9560159768524744
500
-0.3132873
2165.0
1685.0
0.8048060880210364
21226
0.7296753
310.0
385.0
1.658265652149306
15545
-1.5040913
1949.0
590.0
0.35255229330210813
6346
0.1661813
418.5
355.5
1.1220840340204483
4381
0.4344703
136.0
126.0
1.3514141631259926
3385
-0.3704393
4936.0
4341.0
0.7735469348514052
19553
0.7223523
191.0
225.0
1.649869075046894
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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