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GEO accession:
Sample GSM22376
Query DataSets for GSM22376
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 319
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 319 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=319;Tumor.type=D;Size=4;Grade=2;Nodes=1/13;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=44;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
1.5393573
3380.0
14537.0
2.906649110279081
6459
-0.0032613
786.0
554.0
0.9977422702001822
16790
-0.0502363
192.0
138.0
0.9657785556809887
4210
0.0300933
152.0
119.0
1.0210782190571213
13392
-0.3177213
2466.0
2082.0
0.8023363407837579
1575
0.5777553
293.0
307.0
1.4925250712049805
9300
0.2990133
183.0
166.0
1.2303027466818577
5306
0.2052373
172.0
148.0
1.1528753218166772
4514
-0.0577323
148.0
110.0
0.9607735201336157
8664
-0.1158723
158.0
112.0
0.922824409601292
1645
0.6741263
410.5
454.5
1.5956300414481301
13828
0.2113883
160.5
140.0
1.1578011701019766
3944
-0.0054783
151.5
116.0
0.9962101967768049
500
0.0024613
1580.5
1456.5
1.0017074871911635
21226
0.1789843
200.0
166.0
1.132086337802845
15545
-1.2795053
1232.0
359.0
0.41193685575492606
6346
0.2717183
344.0
291.0
1.2072441946335248
4381
0.2354883
142.5
128.5
1.1773049357837677
3385
-1.8891973
3060.5
761.5
0.26995725330299475
19553
0.5240943
158.0
169.0
1.4380301883186104
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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