GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22382
Query DataSets for GSM22382
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 518
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 518 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=518;Tumor.type=L;Size=5.5;Grade=2;Nodes=3/20;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=156;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.5385253
3109.0
4062.0
1.452486615943346
6459
-0.7607673
810.0
331.5
0.5901825231580435
16790
-0.8513883
151.0
76.0
0.5542514025718179
4210
-0.0572223
104.0
93.0
0.9611130335753844
13392
0.0919053
2560.5
2336.0
1.0657768848604674
1575
0.0363883
127.0
114.5
1.02554317800509
9300
0.1490213
156.0
144.0
1.1088164549954915
5306
0.5128353
126.0
152.5
1.426851070521082
4514
0.1672303
93.0
98.0
1.1229001570049786
8664
1.4218153
126.5
269.5
2.6792236973654138
1645
0.5213793
165.0
190.0
1.4353261119337146
13828
1.0372173
100.0
176.0
2.052264542084658
3944
-0.3098933
138.5
99.0
0.8067017302099797
500
-0.1378293
1768.0
1275.5
0.9088859621020494
21226
0.1682603
174.0
159.0
1.1237021751654974
15545
-0.6121323
1160.0
540.0
0.6542290421922066
6346
0.7915593
359.0
439.5
1.7309443534967077
4381
-0.0869253
150.5
121.0
0.9415273686013803
3385
-1.1050363
2998.5
1140.5
0.4648910135534314
19553
0.4465763
108.0
130.0
1.362801648334949
Total number of rows:
22575
Table truncated, full table size
1052 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
