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GEO accession:
Sample GSM22386
Query DataSets for GSM22386
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 633
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 633 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=633;Tumor.type=D;Size=2.7;Grade=3;Nodes=0/11;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.1951363
4014.0
4261.0
0.8734904648906042
6459
-0.0884103
913.0
693.0
0.9405587519594909
16790
0.5798503
442.0
481.0
1.4946942865584647
4210
0.0863543
140.0
104.0
1.0616833632602798
13392
-0.6503643
3909.5
2839.5
0.637119564560081
1575
0.3753213
227.0
203.0
1.2971283448430864
9300
0.3272893
199.0
172.0
1.2546530853034055
5306
-0.0127593
158.0
109.0
0.9911951520781396
4514
0.0116193
134.0
95.0
1.0080861100624374
8664
1.9353483
145.5
384.5
3.824702429449485
1645
1.0153743
453.0
688.0
2.0214270005722565
13828
0.2590823
139.0
116.0
1.1967169446840131
3944
-0.0936813
138.0
91.0
0.9371285135708585
500
-0.5997313
2031.0
1263.0
0.6598771212624988
21226
0.6789633
194.0
214.0
1.6009885704827727
15545
-2.6960523
1883.5
225.0
0.15431480380480786
6346
0.5347683
368.0
379.0
1.4487090218468872
4381
0.1430213
112.0
88.0
1.1042147983162192
3385
-1.9826303
4723.0
1245.0
0.2530282555100611
19553
0.0958573
159.0
118.0
1.0687000863130147
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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