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GEO accession:
Sample GSM22398
Query DataSets for GSM22398
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 843
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 843 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=843;Tumor.type=D;Size=3.4;Grade=2;Nodes=11/20;ER=Pos;PR=Neg;HER2=Neg;Age=76;DFS=122;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
1.5400183
2998.0
12626.5
2.9079808646527403
6459
-0.1716503
598.0
440.0
0.8878266348224422
16790
1.0837833
148.0
276.0
2.1195865353559586
4210
0.3389973
118.0
143.0
1.2648769759579643
13392
0.0642723
2871.5
3826.0
1.0455573087856536
1575
0.3411043
110.0
135.5
1.2667252410254473
9300
0.4407243
145.0
180.0
1.3572856829906852
5306
0.2606873
152.0
167.0
1.1980488429072667
4514
0.1512183
107.0
118.0
1.110506547675707
8664
0.2898753
114.0
135.0
1.2225343009414829
1645
0.7694153
195.0
286.0
1.7045786215551257
13828
2.7289383
119.5
668.5
6.629672096656452
3944
0.0633723
116.0
119.0
1.0449052895580284
500
0.2519123
1826.0
2453.0
1.1907841018577492
21226
0.3371473
179.0
201.0
1.2632556529130976
15545
-1.3481623
1322.5
450.0
0.3927920812731393
6346
0.0807283
456.0
399.0
1.0575513107010939
4381
0.1279833
115.0
123.0
1.0927651276494914
3385
1.0759463
2936.5
8622.5
2.108103829567823
19553
0.8759993
98.5
173.0
1.8352784014071408
Total number of rows:
22575
Table truncated, full table size
1054 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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