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GEO accession:
Sample GSM22400
Query DataSets for GSM22400
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 856
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 856 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=856;Tumor.type=D;Size=1.6;Grade=2;Nodes=0/16;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3787543
3064.0
2554.5
0.7691016186156351
6459
0.9961533
886.0
1376.0
1.994674227646874
16790
0.1787903
189.0
150.0
1.1319340146317347
4210
0.1800613
175.0
140.0
1.1329316545558041
13392
0.4025643
2561.0
3826.5
1.3218547581862181
1575
0.4590073
178.0
171.0
1.3745949468189407
9300
0.6098283
259.5
269.0
1.526077408030989
5306
0.3389303
188.0
166.0
1.2648183673389837
4514
0.3587733
167.0
151.0
1.2823347388153732
8664
-0.0332993
190.0
131.0
0.9771830477234877
1645
0.7600433
279.5
320.0
1.693541479169462
13828
0.2762963
193.5
163.5
1.2110813428775544
3944
0.2927973
263.0
220.0
1.225012740570799
500
-0.3126103
1876.0
1319.0
0.8051836837509707
21226
0.6985073
296.0
324.5
1.6228250144619403
15545
-1.1414313
1289.0
404.5
0.4533095846224468
6346
0.3221223
420.0
353.0
1.25016801229391
4381
0.5007143
165.5
164.5
1.4149137803194987
3385
-1.9382673
2535.0
522.0
0.26092970601207527
19553
0.7631043
179.5
211.0
1.6971384550630897
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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