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GEO accession:
Sample GSM22401
Query DataSets for GSM22401
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 868
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 868 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=868;Tumor.type=D;Size=3;Grade=3;Nodes=0/13;ER=Pos;PR=Pos;HER2=Neg;Age=65;DFS=130;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.1409013
4030.0
2182.0
0.906952752438512
6459
-1.1675973
923.0
190.0
0.44516224815051253
16790
-0.8560223
200.5
74.5
0.5524739828744976
4210
-0.1069463
148.0
94.0
0.9285514204168102
13392
-1.2016643
3897.0
927.0
0.4347735773743054
1575
0.3261983
136.5
114.0
1.2537052383521434
9300
-0.0331523
153.0
100.0
0.9772827608902007
5306
0.5108553
168.5
145.0
1.424894662517129
4514
0.1560653
109.0
90.5
1.1142440400753586
8664
2.1163263
134.0
317.0
4.335884271137921
1645
0.0113263
198.0
121.0
1.0078812506237766
13828
0.0928663
132.0
98.0
1.0664868454601668
3944
0.5478383
214.0
174.5
1.461893516771247
500
-0.1753153
2308.0
1085.0
0.8855743483459714
21226
0.1893093
189.0
130.0
1.1402177340913655
15545
-2.8957123
1728.0
107.0
0.1343704343464111
6346
-0.2375123
348.0
155.0
0.84820687760661
4381
0.9429463
425.0
380.0
1.9224504736856727
3385
-1.3834183
4847.0
1050.0
0.38330962133326985
19553
3.3234703
111.0
570.0
10.010690085296961
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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