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GEO accession:
Sample GSM22402
Query DataSets for GSM22402
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 871
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 871 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=871;Tumor.type=D;Size=4;Grade=3;Nodes=0/16;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=6;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.8967633
3961.0
7567.0
1.8618842646022289
6459
1.2062583
957.5
1499.0
2.307383223920183
16790
-0.7728643
214.0
97.0
0.5852545292966945
4210
0.8597863
263.0
308.0
1.814769390747428
13392
0.1751413
3628.5
3842.0
1.1290750795285458
1575
0.4966203
145.5
156.5
1.4109037030756375
9300
0.1826923
166.5
143.0
1.1349999082318076
5306
0.4521843
164.5
166.5
1.3681102250707355
4514
0.2409663
115.0
114.5
1.1817837683162145
8664
-0.1217883
144.0
108.0
0.9190478347226972
1645
-0.0637313
188.5
135.0
0.9567867726765814
13828
0.0785123
139.0
118.5
1.0559285778946612
3944
0.2695223
161.0
147.0
1.2054080147267585
500
-0.4531333
2155.0
1171.5
0.7304549257957502
21226
0.7396643
188.0
219.0
1.6697871601896725
15545
-1.6526403
1626.0
312.0
0.318057547579743
6346
-0.4716743
362.0
173.0
0.7211272479961102
4381
1.5975813
457.5
830.0
3.026354208953234
3385
-1.6708983
4509.0
1159.0
0.31405782665898346
19553
0.8427003
225.0
268.5
1.7934037540914203
Total number of rows:
22575
Table truncated, full table size
1058 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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