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GEO accession:
Sample GSM22424
Query DataSets for GSM22424
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1507
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1507 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1507;Tumor.type=D;Size=3.7;Grade=3;Nodes=0/40;ER=Pos;PR=Pos;HER2=Neg ;Age=70;DFS=70;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4934443
4315.5
7758.5
1.407801524203654
6459
-1.0309493
836.0
312.0
0.4893882772794828
16790
0.0786143
238.0
208.5
1.0560029267022144
4210
0.1310103
177.0
165.0
1.0950602845294364
13392
-0.0077713
3275.5
3516.5
0.9946282415875142
1575
0.5604453
267.5
318.5
1.4747242322431022
9300
0.3823883
294.0
308.5
1.3034977212557015
5306
0.5862713
253.5
308.5
1.5013610400856758
4514
0.4047663
191.0
212.0
1.3238738789379938
8664
0.1638273
226.0
210.5
1.1202549737150194
1645
0.7816963
313.0
424.0
1.7191511702305553
13828
0.2434083
233.0
228.0
1.1837854713862517
3944
0.2834733
234.0
235.0
1.2171214381970965
500
-0.3598323
2496.0
1771.0
0.7792553036154434
21226
0.5341673
418.0
468.0
1.4481054549687848
15545
-1.2955593
1760.0
525.0
0.4073784064818469
6346
0.4122453
475.5
486.0
1.330754698944297
4381
0.6170213
206.0
261.0
1.5337044614842428
3385
-1.2704973
4095.0
1656.0
0.4145169352890042
19553
0.6345133
246.5
310.5
1.5524139553285112
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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