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GEO accession:
Sample GSM225545
Query DataSets for GSM225545
Status
Public on Aug 22, 2008
Title
Smad1MOD
Sample type
RNA
Channel 1
Source name
Smad1 morphant
Organism
Danio rerio
Characteristics
Smad1 morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set D
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 29, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
[email protected]
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5783
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
3626_0331_0947
-0.389068373651359
13365.89
19722.78
3626_0419_0911
-0.391195821446846
16882.22
24964.55
3626_0354_0810
-0.39389344042587
11064.78
16406.22
3626_0264_0944
-0.407875499863085
9483.56
14259.67
3626_0245_0607
-0.401850558010592
6262.89
9360.44
3626_0479_0167
-0.372598348540414
7215.44
10473.22
3626_0172_0532
-0.548823451164625
13449
23283.11
3626_0728_0748
-0.4344936765027
10915.89
16856.11
3626_0584_0410
-0.442689197279111
7337
11422.89
3626_0485_0839
0.255328199115614
40644.67
31485.89
3626_0184_0102
0.0765612248644364
23971.22
22204.45
3626_0619_0357
0.0612053268509289
30694.67
28872.33
3626_0067_0667
0.189499893168439
41944.55
34703.78
3626_0313_0945
0.185276183335221
40984.78
34053.22
3626_0764_0214
-0.0534299087543846
50037.67
52783.89
3626_0488_0840
0.247564952587912
35655.78
27836.45
3626_0366_0604
0.370866404280317
18658
12876.56
3626_0101_0335
0.291250997157894
9552.11
7138.56
3626_0103_0121
-0.267738733577398
21398.11
27967.45
3626_0254_0524
-0.312086873962675
17794.55
24312.22
Total number of rows:
389359
Table truncated, full table size
18216 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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