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Sample GSM230398 Query DataSets for GSM230398
Status Public on Nov 01, 2007
Title Old trained subject, biological replicate (OT2)
Sample type RNA
 
Source name Vastus Lateralis muscle,old trained subject
Organism Homo sapiens
Characteristics no additional information
Extracted molecule total RNA
Extraction protocol total RNAs were extracted using QIAGEN'S RNeasy Fibrous Tissue Kit
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the The GeneChip® Scanner 3000 7G .
Description Expression of mRNA in Vastus Lateralis muscle,old trained subject
Data processing The data were analyzed with dChip using quantile normalization and PM-only Model Based Expression Indexing.
 
Submission date Sep 19, 2007
Last update date Aug 28, 2018
Contact name Yan W. Asmann
E-mail(s) [email protected]
Organization name Mayo Clinic
Street address 4500 San Pablo Road South
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
 
Platform ID GPL570
Series (1)
GSE9103 Skeletal Muscle Transcript Profiles in Trained or Sedentary Young and Old Subjects
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE dChip PM-only model based expression indexing
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
1007_s_at 120.314 P
1053_at 56.477 P
117_at 20.748 A
121_at 47.819 P
1255_g_at 14.656 A
1294_at 20.317 A
1316_at 18.79 A
1320_at 17.295 A
1405_i_at 24.079 A
1431_at 17.257 A
1438_at 16.291 A
1487_at 225.366 P
1494_f_at 54.68 P
1598_g_at 220.777 P
160020_at 241.489 A
1729_at 21.524 A
1773_at 46.853 P
177_at 8.508 A
179_at 384.381 P
1861_at 37.178 A

Total number of rows: 54613

Table truncated, full table size 1045 Kbytes.




Supplementary file Size Download File type/resource
GSM230398.cel.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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