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Sample GSM231029 Query DataSets for GSM231029
Status Public on Sep 27, 2007
Title Knockout saline, biological replicate 2
Sample type RNA
 
Source name Mouse Nucleus Accumbens from knockout saline treated mice
Organism Mus musculus
Characteristics bilateral, 1mm-thick, 15gauge punches, pooled together from four mice
Extracted molecule total RNA
Extraction protocol RNA was extracted with TriZol and purified with RNAeasy Micro kit.
Label biotin
Label protocol linear amplification kit Ambion #IL1791. Input amount: 200ng of total RNA, IVT 2hrs.
 
Hybridization protocol 16hrs at 55degress C using Illumina reagents
Scan protocol Standard scan factor using Illumina Scanner
Description Nucleus Accumbends, Male 8-12 week old HDAC5 WT or KO mice treated with chronic (7 daily injections) saline or cocaine (20mg/kg).
Data processing The Raw data was extracted using MS5, and median-normalized.
 
Submission date Sep 21, 2007
Last update date Aug 14, 2011
Contact name Will Renthal
Organization name Brigham and Women's Hospital
Street address 60 Fenwood Rd.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL4234
Series (1)
GSE9134 Genome-wide gene expression in HDAC5 wildtype and knockout mice treated with chronic cocaine or saline

Data table header descriptions
ID_REF
VALUE normalized values

Data table
ID_REF VALUE
100050014 0.428644209
100050017 0.257637113
100050019 -0.297348234
100050020 5.489255222
100050022 2.968412391
100050025 0.96325946
100050026 6.511106367
100050035 0.229155525
100050037 5.148540221
100050039 0.203863668
100050040 -0.012411926
100050041 -0.402314378
100050044 1.045863977
100050048 9.611802321
100050050 4.737609624
100050056 -0.726862342
100050066 0.052952957
100050072 -0.288486461
100050075 0.68820427
100050079 3.261890733

Total number of rows: 44505

Table truncated, full table size 924 Kbytes.




Supplementary file Size Download File type/resource
GSM231029.txt.gz 209.4 Kb (ftp)(http) TXT
GSM231029_1.txt.gz 2.6 Mb (ftp)(http) TXT
GSM231029_2.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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