|
| Status |
Public on Oct 11, 2017 |
| Title |
B4NU vector control, Biological replicate 1 |
| Sample type |
RNA |
| |
|
| Source name |
10-day-old seedling
|
| Organism |
Oryza sativa Indica Group |
| Characteristics |
cultivar: Pusa Basmati 1
tissue: Whole seedling
age: 10 days old
transgene: vector control
|
| Growth protocol |
Seeds of each line were surface sterilized with 70% ethanol followed by 0.1 % HgCl2 with repeated rinses with Mili-Q water, and were allowed to imbibe in water for 16 h. The seedlings were grown in light for ten days on half MS basal medium at 28±1oC.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA of roots was performed according to the manufacturer's instructions.
|
| Label |
Biotin
|
| Label protocol |
Biotinylated aRNA were prepared according to the revised 3' IVT Affymetrix protocol from 500ng total RNA.
|
| |
|
| Hybridization protocol |
Following fragmentation, 12.5 ug of aRNA were hybridized for 16 h at 450C on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix Gene Chip Scanner 3300.
|
| Description |
Gene expression data of b4nu 10-day-old Pusa Basmati-1 light grown seedling
|
| Data processing |
First-order analysis was performed using Affymetrix Gene Chip Operating (GCOS) software 1.2.1. Normalization of data and differential expression analysis was done using Expression Console 1.4.1.46 (Affymetrix).
|
| |
|
| Submission date |
Nov 23, 2016 |
| Last update date |
Oct 11, 2017 |
| Contact name |
Jitendra Paul Khurana |
| E-mail(s) |
[email protected]
|
| Phone |
91 11 24115126
|
| Organization name |
University of Delhi South Campus
|
| Department |
Department of Plant Molecular Biology
|
| Street address |
Benito Juarez Road
|
| City |
New Delhi |
| ZIP/Postal code |
110021 |
| Country |
India |
| |
|
| Platform ID |
GPL2025 |
| Series (1) |
| GSE90472 |
Transcriptome profiling of OsbZIP48 rice transgenics |
|
