|
| Status |
Public on Aug 31, 2017 |
| Title |
FFPE_X113134938 [X40_X.384_NHSIIplate5] |
| Sample type |
RNA |
| |
|
| Source name |
breast tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast tumor-adjacent normal
age at diagnosis: 52.16666667
year of diagnosis: 1993
estrogen receptor status: Negative
alcohol intake: 0-10 g/day
microarray batch: 17
patient id: X113134938
nhs_cohort: NHS1
bmi_2yrs_bef_dx: 23.17245929
avg_bodysize_age1020: 2
|
| Treatment protocol |
Formalin-fixed paraffin-embedded tissue blocks.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen AllPrep RNA isolation kit was used to isolate total RNA.
|
| Label |
biotin
|
| Label protocol |
Labeling was performed according to standard Affymetrix protocols.
|
| |
|
| Hybridization protocol |
Hybridization was performed according to standard protocols.
|
| Scan protocol |
Scanning was performed according to standard protocols.
|
| Data processing |
Gene expression data were normalized and summarized using Robust Multiarray Average (RMA; Affymetrix Power Tools [APT] v1.18.0). Differential expression was determined using Limma with multiple hypothesis testing (Benjamini and Hochberg); Bioconductor, R.
GSE93601_ER*_tumor_*_alcohol.xlsx: Limma analyses outputs.
|
| |
|
| Submission date |
Jan 13, 2017 |
| Last update date |
Aug 20, 2020 |
| Contact name |
Rulla M Tamimi |
| E-mail(s) |
[email protected]
|
| Phone |
617-525-0862
|
| Organization name |
Brigham and Women's Hospital
|
| Department |
Medicine
|
| Lab |
Channing Division of Network Medicine
|
| Street address |
181 Longwood Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL22920 |
| Series (1) |
| GSE93601 |
Alcohol Consumption and Breast Tumor Gene Expression |
|
| Relations |
| Reanalyzed by |
GSM3183792 |
