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Sample GSM2457693 Query DataSets for GSM2457693
Status Public on Aug 31, 2017
Title FFPE_X115008334 [X93_195_plate2]
Sample type RNA
 
Source name breast tissue
Organism Homo sapiens
Characteristics tissue: breast tumor
age at diagnosis: 68
year of diagnosis: 1994
estrogen receptor status: Positive
alcohol intake: 0-10 g/day
microarray batch: 4
patient id: X115008334
nhs_cohort: NHS1
bmi_2yrs_bef_dx: 35.89981729
avg_bodysize_age1020: 2
Treatment protocol Formalin-fixed paraffin-embedded tissue blocks.
Extracted molecule total RNA
Extraction protocol Qiagen AllPrep RNA isolation kit was used to isolate total RNA.
Label biotin
Label protocol Labeling was performed according to standard Affymetrix protocols.
 
Hybridization protocol Hybridization was performed according to standard protocols.
Scan protocol Scanning was performed according to standard protocols.
Data processing Gene expression data were normalized and summarized using Robust Multiarray Average (RMA; Affymetrix Power Tools [APT] v1.18.0). Differential expression was determined using Limma with multiple hypothesis testing (Benjamini and Hochberg); Bioconductor, R.
GSE93601_ER*_tumor_*_alcohol.xlsx: Limma analyses outputs.
 
Submission date Jan 13, 2017
Last update date Aug 20, 2020
Contact name Rulla M Tamimi
E-mail(s) [email protected]
Phone 617-525-0862
Organization name Brigham and Women's Hospital
Department Medicine
Lab Channing Division of Network Medicine
Street address 181 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL22920
Series (1)
GSE93601 Alcohol Consumption and Breast Tumor Gene Expression
Relations
Reanalyzed by GSM3182910

Data table header descriptions
ID_REF
VALUE Log2 RMA signal

Data table
ID_REF VALUE
TC0100001 4.12105
TC0100002 5.29502
TC0100003 6.694
TC0100004 2.76827
TC0100005 1.99185
TC0100006 6.48007
TC0100011 6.11952
TC0100012 7.13009
TC0100013 2.38461
TC0100014 4.59566
TC0100015 3.69269
TC0100016 2.62814
TC0100017 2.83228
TC0100019 4.43415
TC0100020 3.64324
TC0100021 4.38663
TC0100022 4.30915
TC0100023 4.46499
TC0100024 3.94924
TC0100025 3.93306

Total number of rows: 25979

Table truncated, full table size 454 Kbytes.




Supplementary file Size Download File type/resource
GSM2457693_X93_195_plate2.CEL.gz 20.0 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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