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Sample GSM2457817 Query DataSets for GSM2457817
Status Public on Aug 31, 2017
Title FFPE_X119891205 [X22_999]
Sample type RNA
 
Source name breast tissue
Organism Homo sapiens
Characteristics tissue: breast tumor
age at diagnosis: 50.58333333
year of diagnosis: 1991
estrogen receptor status: Negative
alcohol intake: 0-10 g/day
microarray batch: 10
patient id: X119891205
nhs_cohort: NHS1
bmi_2yrs_bef_dx: 33.45054228
avg_bodysize_age1020: 3
Treatment protocol Formalin-fixed paraffin-embedded tissue blocks.
Extracted molecule total RNA
Extraction protocol Qiagen AllPrep RNA isolation kit was used to isolate total RNA.
Label biotin
Label protocol Labeling was performed according to standard Affymetrix protocols.
 
Hybridization protocol Hybridization was performed according to standard protocols.
Scan protocol Scanning was performed according to standard protocols.
Data processing Gene expression data were normalized and summarized using Robust Multiarray Average (RMA; Affymetrix Power Tools [APT] v1.18.0). Differential expression was determined using Limma with multiple hypothesis testing (Benjamini and Hochberg); Bioconductor, R.
GSE93601_ER*_tumor_*_alcohol.xlsx: Limma analyses outputs.
 
Submission date Jan 13, 2017
Last update date Aug 20, 2020
Contact name Rulla M Tamimi
E-mail(s) [email protected]
Phone 617-525-0862
Organization name Brigham and Women's Hospital
Department Medicine
Lab Channing Division of Network Medicine
Street address 181 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL22920
Series (1)
GSE93601 Alcohol Consumption and Breast Tumor Gene Expression
Relations
Reanalyzed by GSM3183508

Data table header descriptions
ID_REF
VALUE Log2 RMA signal

Data table
ID_REF VALUE
TC0100001 3.78572
TC0100002 1.96933
TC0100003 6.92999
TC0100004 1.28042
TC0100005 1.48562
TC0100006 7.53725
TC0100011 5.65754
TC0100012 7.88368
TC0100013 3.6369
TC0100014 4.06501
TC0100015 3.75573
TC0100016 2.18745
TC0100017 3.2015
TC0100019 4.18764
TC0100020 3.48027
TC0100021 4.1459
TC0100022 4.67273
TC0100023 4.04729
TC0100024 3.92175
TC0100025 3.60384

Total number of rows: 25979

Table truncated, full table size 454 Kbytes.




Supplementary file Size Download File type/resource
GSM2457817_X22_999.CEL.gz 21.4 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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