NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM252722 Query DataSets for GSM252722
Status Public on Dec 04, 2008
Title Control euthyroid CN_13
Sample type RNA
 
Source name Control euthyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP; standard chow (Harlan Teklad F6 Rodent Diet 8664)
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10344614 5.05438
10344620 2.223299
10344622 5.152343
10344624 9.771102
10344633 8.868265
10344637 7.10765
10344653 2.113952
10344658 6.471272
10344674 2.634935
10344679 3.496256
10344707 8.129727
10344713 12.35477
10344723 5.640514
10344725 9.291694
10344741 9.267576
10344743 2.341095
10344750 6.403149
10344772 2.200108
10344789 6.179238
10344797 7.190574

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252722.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap