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Sample GSM252723 Query DataSets for GSM252723
Status Public on Dec 04, 2008
Title Control euthyroid CN_14
Sample type RNA
 
Source name Control euthyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP; standard chow (Harlan Teklad F6 Rodent Diet 8664)
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.75489
10338002 7.452556
10338003 10.42343
10338004 9.307858
10338005 1.497071
10338006 1.722633
10338007 2.232232
10338008 3.56714
10338009 9.927728
10338010 1.605902
10338011 6.459013
10338012 1.634228
10338013 1.398126
10338014 1.429302
10338015 1.432998
10338016 8.972805
10338017 12.73806
10338018 7.875188
10338019 5.692796
10338020 9.88136

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252723.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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